Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27990 63 / 2e-12 Pre-rRNA-processing protein TSR2, conserved region (.1) AT3G22510 48 / 2e-07 Pre-rRNA-processing protein TSR2, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027901 [exp] 314 / 4e-110 AT5G27990 79 / 3e-18 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10005806 [exp] 120 / 8e-34 AT5G27990 107 / 4e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10006795 [exp] 118 / 2e-33 AT5G27990 107 / 2e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10006124 [exp] 66 / 2e-12 AT3G22520 340 / 4e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G047901 [exp] 112 / 6e-31 AT5G27990 124 / 7e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.013G035000 [exp] 108 / 1e-29 AT5G27990 126 / 1e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.010G086800 [exp] 77 / 2e-18 AT3G22510 98 / 2e-27 Pre-rRNA-processing protein TSR2, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10273 [flax] [poplar] WGG Pre-rRNA-processing protein TSR2
Representative CDS sequence Show only first row Show all	>Lus10002404 pacid=23170836 polypeptide=Lus10002404 locus=Lus10002404.g ID=Lus10002404.BGIv1.0 annot-version=v1.0 ATGGTCGGCGGAGAAGACGCCCAAAACGGGACAGAAATTAAACTGAAGGAAGGAATACATTTGATTCTCTCCAGATGGTCAGTTCTGGTGGATTCCGTCG ACCAAGAAATGGCCGGCCGAGACTCCTGGAAATTGGCCGATCAACTCGCATCCGACATCTACTCATGGTTCATCCAAAAACGGAAAGCCGGTGAGCTTTA TATTGATGATCTGGAACAAGTTCTCGAAAAAGGAATGGAGACTCTTTCCGTCTATTTTGACGATGCCAGCTATGAAGACATTGAGGAGGTAGCAGAGGCT CTCATGATAATGCACGAGGAATGGGTGGCAGGTGACTATAGCTATGTCGACAAGTTGAAAGCTGCTCCGAAGCCTAATGCTACTGAAACTCGTCAACGTA TCGTACAGGCTGATGGTGATGAAGATGACTCTTCCAGTTCCAGTGGTGATGATGATGGTGGTGATGGGGATATGATGATTCCTGGAGGTAGTGAATCGGA TATGGCGGTGGATTCAGCGGCCACGATGACTACACCGGCTCCTCAGATGGATGATGATGGTTGGACCGTCGTCTCCTCCTCCCGTCGAAACAGAGGTAGA AGGAACTGA
AA sequence Show only first row Show all	>Lus10002404 pacid=23170836 polypeptide=Lus10002404 locus=Lus10002404.g ID=Lus10002404.BGIv1.0 annot-version=v1.0 MVGGEDAQNGTEIKLKEGIHLILSRWSVLVDSVDQEMAGRDSWKLADQLASDIYSWFIQKRKAGELYIDDLEQVLEKGMETLSVYFDDASYEDIEEVAEA LMIMHEEWVAGDYSYVDKLKAAPKPNATETRQRIVQADGDEDDSSSSSGDDDGGDGDMMIPGGSESDMAVDSAATMTTPAPQMDDDGWTVVSSSRRNRGR RN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27990			Pre-rRNA-processing protein TS...		Lus10002404 [exp]	0	1
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10024867 [exp]	6.4	0.8005
AT2G45520			unknown protein		Lus10009304 [exp]	10.2	0.8155
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	11.0	0.8690
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	12.2	0.8584
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	13.3	0.8312
AT5G08320			unknown protein		Lus10017382 [exp]	27.7	0.8293
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	28.0	0.8426
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	28.5	0.7920
AT5G60340			P-loop containing nucleoside t...		Lus10040792 [exp]	32.8	0.7848
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	34.1	0.8349

Compare expression of checked genes

Lus10002404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.