Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19230 575 / 0 Leucine-rich repeat (LRR) family protein (.1) AT3G05990 436 / 1e-148 Leucine-rich repeat (LRR) family protein (.1) AT2G14440 196 / 3e-54 Leucine-rich repeat protein kinase family protein (.1) AT2G14510 194 / 1e-53 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 186 / 4e-51 Leucine-rich repeat protein kinase family protein (.1.2.3) AT5G59680 182 / 2e-49 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 181 / 5e-49 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 181 / 6e-49 Leucine-rich repeat protein kinase family protein (.1) AT1G67720 177 / 1e-47 Leucine-rich repeat protein kinase family protein (.1) AT5G16900 176 / 2e-47 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027903 [exp] 1012 / 0 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002456 [exp] 441 / 1e-150 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10010528 [exp] 315 / 2e-103 AT3G19230 395 / 4e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10036935 [exp] 201 / 1e-55 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 192 / 2e-52 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 177 / 2e-47 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 167 / 5e-44 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 132 / 1e-32 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019237 [exp] 125 / 3e-30 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102300 [exp] 692 / 0 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.008G150200 [exp] 468 / 3e-161 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 454 / 4e-156 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G052800 [exp] 184 / 5e-50 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G043700 [exp] 175 / 5e-48 AT3G46280 216 / 3e-63 protein kinase-related (.1) Potri.008G181200 [exp] 176 / 4e-47 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 173 / 4e-46 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 172 / 8e-46 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.013G030800 [exp] 165 / 2e-44 AT2G19210 224 / 2e-63 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 144 / 2e-36 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10002405 pacid=23170823 polypeptide=Lus10002405 locus=Lus10002405.g ID=Lus10002405.BGIv1.0 annot-version=v1.0 ATGTCTTCCTCAATCTTCCTCCTATGGCTTGCTACCATTCCCATCTTATTCCCCAATTCTGCAGCTGCTCCCCTCCCAATCCCAGGCCCCAAAGGTTTCC CACTAAACTGCGGAGCAACAGAGGAAGTAACCCTCGGCGGTCAAAAATACATCCCAGACGACGGATTCACCCTCGCCGGAACCAAAGCCACCGTCAAAAC CCCCGGCCTACTCCCCATCCTCTCCACCCTCCGGTTCTTCCCTGACGGCCAAGCTCGAAAGTTCTGCTACGAATTCCAAGTCATCAAAGGGGGCAAGTAC CTTATCCGGACCATTTACTACTACGGCGGGTACGACGGAGGGAAGGACCCACCGGTGTTCGACCAGATCGTCGGCGGGACGAAATGGGCCACAGTGGACA CGACGGAGGACTACGCCAAGGGGATGAGCACGTATTACGAGATAGTCGTTGTGTCCTCTTCTAGGACGCTCGACGTTTGCCTGGCGAGGAACAAGAATAC GACGTCGTATCCGTTTATATCGGCGATGGTGGTCCAGTCGTTGGAGAATTCCATGTATAATTCGACGGATTTTAACAGGTTTGCGCTTACTACTGTCGCC AGGAACTTCTTTGGGCACGAAGGTGTTGCTATTGGCTTTCCAGACGACCAATACAACAGGCTATGGGAGCCATTCAACGACAAGGAGCAGCCCATAGTTG AAAGCAAGTCCAACGTGACGTCATCCGACTTCTGGAACTTCCCGCCGGCGAAGGCGTTCACAAAAGGGTTCACGACCAGCCGGGGGAAGACCATTAGATT CCAGTGGCCGCCGGTCCCACTCCCAGCGACCAAGTACTACGTGGCACTCTACTTCCAGGACAACCGGACCCCCAGCCCTTACAGCTGGAGGGTCTTCAGC GTCACGGTTAACGGCATTCAGTTTTACAAGGATCTTAACGTGACGACTAGAGGGGTCACCGTTTACGCGTCGGAGTGGCCGCTTTCTGGTGTGACGGAGC TGACGTTGACCCCCGCCGATGATGTTCCGGTGGGGCCCGTGATCAATGCTGGCGAAGTGATGCAGCTTTTGCCTTATGGTGCGCGGACACAAACGAGAGA TGTGATTGCGATGGAAGCTATATCTAGTAGTTTCAACAACCCACCGGCGGACTGGGTCGGCGATCCGTGCTTGCCGCCGGACAACTCCTGGACTGGCCTC ACTTGCACTAAGGAGGCATTTCCTAGAGTTCTCAAAATAGAGCTTAAGGACAAGGGATTAACTGGATCACTATCTCCAAGCATTGCAAATTTAACTGCAC TCACTAGTCTTTGGCTAGGAGGGAACAAGCTCACAGGTGAAATCCCAGATCTGGGATCAATGAAGGATCTACAGTCCTTGCATTTAGAAGGCAACCAACT TGAAGGTTTAATCCCTCAATCGTTAGGCCTATTAAGGAAGATTAGTGAGATATACCTACAGAACAATAATCTACACGGCAAAATCCCTGGCTCACTACAG AACAAACCTGGACTAACTCTACAGGTGACCCCTGGCAATAACATTTCTAACTGA
AA sequence Show only first row Show all	>Lus10002405 pacid=23170823 polypeptide=Lus10002405 locus=Lus10002405.g ID=Lus10002405.BGIv1.0 annot-version=v1.0 MSSSIFLLWLATIPILFPNSAAAPLPIPGPKGFPLNCGATEEVTLGGQKYIPDDGFTLAGTKATVKTPGLLPILSTLRFFPDGQARKFCYEFQVIKGGKY LIRTIYYYGGYDGGKDPPVFDQIVGGTKWATVDTTEDYAKGMSTYYEIVVVSSSRTLDVCLARNKNTTSYPFISAMVVQSLENSMYNSTDFNRFALTTVA RNFFGHEGVAIGFPDDQYNRLWEPFNDKEQPIVESKSNVTSSDFWNFPPAKAFTKGFTTSRGKTIRFQWPPVPLPATKYYVALYFQDNRTPSPYSWRVFS VTVNGIQFYKDLNVTTRGVTVYASEWPLSGVTELTLTPADDVPVGPVINAGEVMQLLPYGARTQTRDVIAMEAISSSFNNPPADWVGDPCLPPDNSWTGL TCTKEAFPRVLKIELKDKGLTGSLSPSIANLTALTSLWLGGNKLTGEIPDLGSMKDLQSLHLEGNQLEGLIPQSLGLLRKISEIYLQNNNLHGKIPGSLQ NKPGLTLQVTPGNNISN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10002405 [exp]	0	1
AT1G50650			Stigma-specific Stig1 family p...		Lus10000696 [exp]	3.5	0.7671
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10015498 [exp]	18.0	0.6407
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10042788 [exp]	23.2	0.7515
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	25.1	0.7147
AT5G12000			Protein kinase protein with ad...		Lus10008466 [exp]	37.8	0.6914
AT5G37550			unknown protein		Lus10020807 [exp]	40.9	0.6979
AT1G02550			Plant invertase/pectin methyle...		Lus10018615 [exp]	65.7	0.6822
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023317 [exp]	66.5	0.6741
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	73.2	0.6614
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10039622 [exp]	81.4	0.6322

Compare expression of checked genes

Lus10002405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.