Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33650 947 / 0 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 923 / 0 DRP3B dynamin related protein (.1.2.3) AT5G42080 240 / 4e-69 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G14830 237 / 8e-68 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G60190 233 / 1e-66 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT3G61760 231 / 9e-66 ADL1B DYNAMIN-like 1B (.1) AT2G44590 228 / 1e-64 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G60500 143 / 3e-35 DRP4C Dynamin related protein 4C (.1) AT1G60530 116 / 2e-28 DRP4A Dynamin related protein 4A (.1) AT1G53140 46 / 0.0001 DRP5A Dynamin related protein 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014041 [exp] 1187 / 0 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019875 [exp] 1132 / 0 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027906 [exp] 1075 / 0 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10012076 [exp] 1026 / 0 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027905 [exp] 581 / 0 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10040117 [exp] 251 / 8e-72 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10023073 [exp] 241 / 2e-69 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10003873 [exp] 235 / 3e-67 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 235 / 4e-67 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118300 [exp] 1065 / 0 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.017G041800 [exp] 1062 / 0 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 372 / 4e-123 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3) Potri.003G141000 [exp] 249 / 2e-72 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 246 / 2e-71 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 243 / 2e-70 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.014G043600 [exp] 237 / 5e-68 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 234 / 6e-67 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 234 / 9e-67 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 223 / 7e-63 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10002407 pacid=23170837 polypeptide=Lus10002407 locus=Lus10002407.g ID=Lus10002407.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGAAGCTTCGCAGTCACCTTCAGAGTCCTCCGCGCCGCCGCTGGGGTCCACGGTGATTCCGATAGTGAACAAGCTCCAGGATATCTTTG CTCAGCTCGGCAGCCAGTCGGCGATCGACTTGCCGCAGGTGGCGGTGGTCGGGAGCCAGAGCAGTGGAAAATCGAGTGTCCTCGAGGCTCTAGTCGGTAG GGATTTCCTGCCGCGCGGCAACGACATTTGCACGCGGCGGCCTCTCGTTCTGCAGCTGGTGCAGACGAAGAGGAGAAGCAGCGACGGGAGTGAGGAAGAG TGGGGAGAGTTCCTGCATCGTCCTGATAAGCGGTTCCACGACTTCTCCGAGATCCGCAACGAAATTGAGGCTGTAACTGTGAAGGAAGCCGGAGAGAACA AAGGAGTAACTGATAAGCAGATCCGTTTGAAGATCTACTCCCCGAATGTTCTTGATATGACGCTTGTTGATCTTCCTGGAATAACAAAAGTTCCTGTTGG CGATCAGCCGTCCGATATCGAAGCGAGAATCAGGACTATGATCATGTCGTACATAAAAAAGCCTAGCTGTCTTATTCTGGCTGTTACTGCTGCCAATGCG GACTTGGCAAACTCAGATGCACTTCAAGTTGCAGGAATAGCCGATCCTGATGGTTACAGGACGATTGGTGTAATCACAAAGCTGGATATCATGGATAGAG GCACTGATGCTCGTAATCTGTTACTTGGAAAAGTGGTTCCTCTTCGACTTGGTTATGTAGGTGTTGTGAATCGTAGTCAAGAGGATATTAATCTCAACCG AACTATTAAGGATGCACTTGCAGCGGAGGAGAAGTTCTTCAGAAGCCGTCCAGTACGACATCCCTGCCCTTTAGTTGCAATTGCTCTTGTATACAATTCA TTGGCTGATCGTTGTGGTATTCCTCAGCTTGCGAAGAAGTTGAACCACATTTTAGTACAGCATATTAAAGGAATTCTTCCGGTGCTGAAGTCACGGATAA GTGATGCATTGGTTTCTACTGCTAAGGAGCATGCTAGCTACGGAGAAATCACTGAGTCTAAGGCCGGTCAAGGTGCTCTTCTCTTGAACATCTTTTCAAA GTACGGCAAAGCTTTTTCGTCAATGTTGGAGGGAGAAAATGAAGAAACCTCGACATCCCAGCTATCTGGGTTAGCACGCATCAAATACGTCTTCCACTCA ATTTTCGTTAAGAGCTTAGAGGGGGTTGATCCTTGTGAGGATCTGACAGATGATGACATCCGGATCGCCATTCAAAACGCATGTGGTAGTAATGCGGCTC TGTTTGTACCCGTTGGTCCGTTTGAAGTTCTTGTCCGGCGGCAAATTGCCAGGTTACTGTATCCAAGCCTTCAGTGTGCAAGGTTCATATATGATGAGCT AATAAAGATTAGCCATCGATGTCTAGCCAATGAACTGGAGCGGTTCCCTGTTCTGAAAAAACGCATGGATGAAGTGATTGGCAACTTTTTACGGGACGGA CTTGAACCATCCGAGACGATGATTGGCCATCTTATCGAGATGGAGATGGACTATATAAATACCGCCCATCCGAATTTCATTGGAGGGACCAAGGCTGTGG AAATGGCGGAGCAACAGGTCAAGTCTGCAAGACTTGTCTCTGTAATCCCAAGAACTAAGGATGCCACAGAAGCTGATAAAGCACCACTAGCCTCGGAGAG AAGTCTGAAGTCTCGATCTATTCTTGGCAGAGCTGGAGTAAGTCAGGTGGCAGATGTTGAGAAGGTTGCACCATCTGGCAATCTTGGAGGTTCCTCTTGG GGCATTTCGTCGATTTTCCGTGGAAGTAGTAGTTCACGTATTCCGTCCGAGAAGAGCTCAACGGGTATGCCATACATGGAGGCAGTTCCTGGAAGCGATC CTTTGGACAAGATCCTGTCTACGATCCATTTGCAAGAGCCGCCAGAATTGTTAAGACCTTCAGAAAGCCCATCGGAGCAAGAGTCGATTGAGATCACAGT CATCAAATTGCTACTGCAGTCCTACTACAATATTGTTCGGAAGAACGTCGAGGATTTAGTGCCTAAAACGATCATGCACTTTCTGGTGCATCATGCGAAG CGCGACTTGCACAACGTAATGATAAAAAAGCTCTACAGAGAGAACCTGTTTGAGGAGATGCTGCAAGAGCCCGACGAGATTTCATTAAAGAGAAAGTGGA CACGAGATACACTCAAGGTCCTTCAGCAAGCGTTTCGAACGCTTGAAGAACTGCCGCTGGAAGCCGACTCTGTCGAAAGAGGACACGGTTCTGGTTCTGA TGCAACTGGGTTACCCAAACTCCATGGATTTCCTTTGTCGTCGTCGATGAACACTGGCTCCAACGGGCTCTACACAGGCTCCTTTCCAAATCACTGTAAG TCTAGGAAGTCGGCCTCGTCTTCTCCTTCTCACTCTGGTGATCTGCAGTCACATTATCACCCTATGGTCGATTCTAGCGGAAGTGCCAGAGGGGCTTACA TGCCTAGTCTGTAA
AA sequence Show only first row Show all	>Lus10002407 pacid=23170837 polypeptide=Lus10002407 locus=Lus10002407.g ID=Lus10002407.BGIv1.0 annot-version=v1.0 MAEEEASQSPSESSAPPLGSTVIPIVNKLQDIFAQLGSQSAIDLPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLVQTKRRSSDGSEEE WGEFLHRPDKRFHDFSEIRNEIEAVTVKEAGENKGVTDKQIRLKIYSPNVLDMTLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKKPSCLILAVTAANA DLANSDALQVAGIADPDGYRTIGVITKLDIMDRGTDARNLLLGKVVPLRLGYVGVVNRSQEDINLNRTIKDALAAEEKFFRSRPVRHPCPLVAIALVYNS LADRCGIPQLAKKLNHILVQHIKGILPVLKSRISDALVSTAKEHASYGEITESKAGQGALLLNIFSKYGKAFSSMLEGENEETSTSQLSGLARIKYVFHS IFVKSLEGVDPCEDLTDDDIRIAIQNACGSNAALFVPVGPFEVLVRRQIARLLYPSLQCARFIYDELIKISHRCLANELERFPVLKKRMDEVIGNFLRDG LEPSETMIGHLIEMEMDYINTAHPNFIGGTKAVEMAEQQVKSARLVSVIPRTKDATEADKAPLASERSLKSRSILGRAGVSQVADVEKVAPSGNLGGSSW GISSIFRGSSSSRIPSEKSSTGMPYMEAVPGSDPLDKILSTIHLQEPPELLRPSESPSEQESIEITVIKLLLQSYYNIVRKNVEDLVPKTIMHFLVHHAK RDLHNVMIKKLYRENLFEEMLQEPDEISLKRKWTRDTLKVLQQAFRTLEELPLEADSVERGHGSGSDATGLPKLHGFPLSSSMNTGSNGLYTGSFPNHCK SRKSASSSPSHSGDLQSHYHPMVDSSGSARGAYMPSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10002407 [exp]	0	1
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Lus10012290 [exp]	2.8	0.8804
AT3G02420			unknown protein		Lus10034084 [exp]	6.5	0.8733
AT4G11670			Protein of unknown function (D...		Lus10006312 [exp]	11.1	0.8725
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	11.6	0.8497
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	13.3	0.8763
AT4G10930			unknown protein		Lus10032402 [exp]	13.4	0.8392
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	13.8	0.8721
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10008685 [exp]	17.7	0.8315
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	18.7	0.8243
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	21.5	0.8638

Compare expression of checked genes

Lus10002407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.