Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71240 927 / 0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) AT1G48840 249 / 4e-72 Plant protein of unknown function (DUF639) (.1) AT3G18350 242 / 3e-69 Plant protein of unknown function (DUF639) (.1) AT5G23390 214 / 4e-59 Plant protein of unknown function (DUF639) (.1) AT2G21720 127 / 5e-30 Plant protein of unknown function (DUF639) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027905 [exp] 1323 / 0 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10013865 [exp] 252 / 5e-73 AT3G18350 897 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10026581 [exp] 229 / 2e-64 AT1G48840 870 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10020973 [exp] 224 / 1e-62 AT1G48840 899 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010668 [exp] 167 / 5e-43 AT2G21720 775 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10007431 [exp] 163 / 7e-42 AT2G21720 767 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010155 [exp] 121 / 4e-28 AT5G23390 781 / 0.0 Plant protein of unknown function (DUF639) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210200 [exp] 1067 / 0 AT1G71240 968 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Potri.015G046500 [exp] 257 / 7e-75 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.012G055800 [exp] 253 / 3e-73 AT1G48840 894 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.008G003000 [exp] 214 / 4e-59 AT5G23390 730 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.013G062700 [exp] 167 / 5e-43 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF04842 [flax] [poplar] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Lus10002408 pacid=23170830 polypeptide=Lus10002408 locus=Lus10002408.g ID=Lus10002408.BGIv1.0 annot-version=v1.0 ATGGCAGCAGGACTAGTACCTGGTTCTTTGATTTTGCATCCCAGTGAGTTTTGCAGGTGGCCAAGGCAGGGTCATGGCCACCGGTTGAGGTTTAAGGTCG TGGGTCAGTCTCCTGGGAATGGATGGAAGCTCAACGACATTGATACCAAGGCAGTGCAGGAACAGTTGAGCTCATGGATGTCTAAGACCCAAAATTTTGT TAAGCAAGTCGCTTCGCCCCTGGTGAAGTCTGGTTACACTGGAAAAATCACTTCTGAAAATGCGGTTGATGCCTTAGAGCTGGAGGAAGTGTTTCTGGTT GAGCCGACTATTAACAGAAAAACATCAAAAGGAGTTCTTTCAATGGCTGCTTTGGTATCTATTGAGCAATTTAGCAGGATGAATGGATTGACCGGATATA AAATTATGAAGATTTTTAAAGCTCTTGTTGCAGAGCCTGTTTATAGTGATGCTCGTAATTTGGTGGAGTATTGCTGCTTTAGGTTCTTGTCCAGGGATAG CTCATTGTTCCATCCATGTCTCAAGGAAGCAGCGTTTCAGCGGTTAATATTCATCACAATGCTTGCATGGGGAAATCCTTACTGCAAGGGGAATACGTCC CAGGAAGGTTCTTTAAAGGGACAGCTTGTTGGAAAAGAGGCTTTTGTCCGTATTGCTCCAGCTATTCCTGGTGTAGCTGATCATTCCACAGTGCATAACC TTTTCAAAGCCCTAGCTGGTGACGAAAGAGGCATCTCAGTGAAAGTGTGGTTAACTTATATCGATGAACTTCTCAAAGTGCATGAAGGAAGAAAGTCATA CCAGACCCGTGAAGATCGTCAGCTTCGGAATGAAAAAGTCCTGTGCATTGGTTCTAGCAAGAAGCAGCCTGTCCTGAAATGGGAAAATGGTATTGGATGG CCTGGGAAAGTCACTTTGACCGAGAAAGCACTGTATTTCGAGGCTGTTGAGTTGTTCGGGAAAAAAAGCTCGATAAGGCTTGACCTTACAAGAAACGGAT TACAAGTACAGAAAACAAAAGTTGGACCGCTGGGTTCTGTACTCTTTGATTCTGCAGTCTCTGTTGAATCAACTTCTGGATCAGACAGATTAGTGCTAGA GTTTGTTGATTTGGGAGGTGAATTGAGGCGCGATGCTTGGCATGCATTTATCTCTGAAGTAGTTTCCTTGCATAAGTTTTTAACCGAGTATGGACCAGAT GATGGTGATCCTTCAATATCACAAGTATACGGTGCCGAAAACGGCAGACAAAGGGCCATTGACAGCGCAATCAACAGCATAGCCAGACTTCAGGCTCTTC AGTTTATGAGGAAATTGGTGGATGATCCTCTCAAACTAGGTCAGTTCTCATACCTTCGAAACGCACCATACGGAGAGATTGTGTTCCAAACTCTGGCTCT AAACTATTGGTGTGGGCCTCTGGCTAAGTCCTTTAAAGAGGATGACTATCAACCGACTCCGAGAGCATTGTCTACTGATGGTGTATCGAAAATCAAAAGT CATTTGGCCGACATTGACGGGAGCATCTACCTGCGGCAGTGGATGAGGTCTCGATCTTGGGTCTCCAGTGCTTCCACTAGTTTCTGGAAGAACTCATCAA CTGGGCAAGGTGTAGTTCTGAGTAAAGATCTAGTTGTTGCTGATCTCAACCTAGTAGAAAAGGCAGCTTCAACATGTAGAGAAAAAAATGAAGTAGCAGA AAAAACTCAAGAAACAATAGATGCTGCAATGCTGAAAGGGATACCAAGCAACATTGATCTTTTAAAGGAACTGATACTTCCCTTATCCATGACGGCCAAG AATTTTGAAAAGCTGAAACGTTGGGAAGAACCACATCTAACAATCTCTTTTCTTGCATTTGCCTATGCTATAATTTTCAGAAATCTGCTATCCTATGTAC TTCCAATGATGATGATGGTTTTGGCAGCCGGAATGCTGACATTAAAGGGGCTCAAGCAGCAAGGTCGCTTGGGAAGATCATTTGGAAAAGTCGTTATTAA GGACCAACCCCCTTCAAATACCATTGAAAAGATTATAGCTGTTAAAGATGCCATGCGAGACGTCGAAAATTACCTTCAGAATCTTAACGTCATCTTGTTG AAAATACGGAATATCTTTCTTTCAGGTCAACCACAGGTGACAACGGAGGTTGCGCTTGTGTTATTATCTGGTGCTATTGTTCTTGTCGTAGTTCCTTTCA AGTACATCCTAGCCTTTTTCCTATCTGATCTTTTCACTCGGGAGCTCGAGTTCCGTAAAGATATGGTAAGAAAGTTTAGAACCTTATTGAAGGAGCGTTG GGACACAGTGCCTGCTACTTCTGTTGTTGTCTTGCCATTCGAGAGCGAAGCGTCGAAATCACGAACTGAAAGAAAGAAGTCTGGCGACGAGTAA
AA sequence Show only first row Show all	>Lus10002408 pacid=23170830 polypeptide=Lus10002408 locus=Lus10002408.g ID=Lus10002408.BGIv1.0 annot-version=v1.0 MAAGLVPGSLILHPSEFCRWPRQGHGHRLRFKVVGQSPGNGWKLNDIDTKAVQEQLSSWMSKTQNFVKQVASPLVKSGYTGKITSENAVDALELEEVFLV EPTINRKTSKGVLSMAALVSIEQFSRMNGLTGYKIMKIFKALVAEPVYSDARNLVEYCCFRFLSRDSSLFHPCLKEAAFQRLIFITMLAWGNPYCKGNTS QEGSLKGQLVGKEAFVRIAPAIPGVADHSTVHNLFKALAGDERGISVKVWLTYIDELLKVHEGRKSYQTREDRQLRNEKVLCIGSSKKQPVLKWENGIGW PGKVTLTEKALYFEAVELFGKKSSIRLDLTRNGLQVQKTKVGPLGSVLFDSAVSVESTSGSDRLVLEFVDLGGELRRDAWHAFISEVVSLHKFLTEYGPD DGDPSISQVYGAENGRQRAIDSAINSIARLQALQFMRKLVDDPLKLGQFSYLRNAPYGEIVFQTLALNYWCGPLAKSFKEDDYQPTPRALSTDGVSKIKS HLADIDGSIYLRQWMRSRSWVSSASTSFWKNSSTGQGVVLSKDLVVADLNLVEKAASTCREKNEVAEKTQETIDAAMLKGIPSNIDLLKELILPLSMTAK NFEKLKRWEEPHLTISFLAFAYAIIFRNLLSYVLPMMMMVLAAGMLTLKGLKQQGRLGRSFGKVVIKDQPPSNTIEKIIAVKDAMRDVENYLQNLNVILL KIRNIFLSGQPQVTTEVALVLLSGAIVLVVVPFKYILAFFLSDLFTRELEFRKDMVRKFRTLLKERWDTVPATSVVVLPFESEASKSRTERKKSGDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71240			Plant protein of unknown funct...		Lus10002408 [exp]	0	1
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	1.7	0.9233
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	2.4	0.9088
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	3.5	0.9081
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	4.5	0.9103
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	9.5	0.8978
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	9.8	0.8916
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	10.6	0.8811
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	11.8	0.8835
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	14.2	0.8261
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	14.3	0.8536

Compare expression of checked genes

Lus10002408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.