Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56190 428 / 1e-152 ASNAP, ALPHA-SNAP2 alpha-soluble NSF attachment protein 2 (.1.2) AT3G56450 257 / 4e-84 ALPHA-SNAP1 alpha-soluble NSF attachment protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032835 [exp] 559 / 0 AT3G56190 385 / 6e-135 alpha-soluble NSF attachment protein 2 (.1.2) Lus10001258 [exp] 400 / 1e-141 AT3G56190 360 / 7e-126 alpha-soluble NSF attachment protein 2 (.1.2) Lus10012211 [exp] 366 / 5e-119 AT3G08840 1101 / 0.0 D-alanine--D-alanine ligase family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G181900 [exp] 503 / 0 AT3G56190 366 / 3e-128 alpha-soluble NSF attachment protein 2 (.1.2) Potri.008G075400 [exp] 501 / 0 AT3G56190 360 / 6e-126 alpha-soluble NSF attachment protein 2 (.1.2) Potri.016G129900 [exp] 418 / 1e-148 AT3G56190 359 / 2e-125 alpha-soluble NSF attachment protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02071 [flax] [poplar] NSF Aromatic-di-Alanine (AdAR) repeat
Representative CDS sequence Show only first row Show all	>Lus10002410 pacid=23145807 polypeptide=Lus10002410 locus=Lus10002410.g ID=Lus10002410.BGIv1.0 annot-version=v1.0 ATGGGAGATCAAGTAGCTCGGGCGGAGGAGTTCGAGAAGAAAGCAGACAAGAAGCTTACCGGCTGGGGCTTGTTCGGCTCCAAATTCGAAGACGCCGCCG ATCTCTTCGATAAAGCTGCTAATTCTTACAAACTTGCCAAATCATGGGATAAGGCTGGGTCTACGTATGTCAAGTTGGCAAACTGTCATCTCAAACTGGA CAGCAAACATGAGGCAGCTCAAGCTTACGTTGATGCTGCTCACTGCTATAAGAAAACCTCCACAAGTGAAGCAATTTCTTGCTTAGGTCAGGCAGTGGAG ATGTTTTGTGACATTGGAAGAATCAGTATGGCTGCCAGATACAATAAGGAAATTGCTGAATTGTATGAATCAGAACCAAACATAGAGAAATCAATTCAGT TTTATGAGAAAGCTGCAGATTTCTTCGAAGGTGAAGAAGTAACAACTTCTGCCAACCAGTGCAAGCAGAAAGTAGCTCAGTTTGCTGCTCAATTGGAACA ATACCCGAAGGCGATTGAGATTTATGAAGAAATTGCCCGCCACTCTCTCAGTAATAACTTGCTCAAATATGGGGTTAAAGGTCATCTTCTGAATGCTGGG ATTTGCCATCTCTGCAAAGGCGATGTTATCGCAATTACAAATGCCCTTGAGAAATATCAGGATCTGGATCCGACCTTTGCTGGGACTCGTGAATATAGAT TGCTAGTGGATCTTGCTGGTGCTATTGATGAGGAAGACGTTGCAAAATTTACTGACGCGGTCAAGGAATTTGACAGCATGACCCAACTGGATTCTTGGAA AACAACCCTGCTGTTGAGGGTGAAAGAGAAGATCAAGGCCAAGGAGCTAGAGGAGGATGACCTCACTTAA
AA sequence Show only first row Show all	>Lus10002410 pacid=23145807 polypeptide=Lus10002410 locus=Lus10002410.g ID=Lus10002410.BGIv1.0 annot-version=v1.0 MGDQVARAEEFEKKADKKLTGWGLFGSKFEDAADLFDKAANSYKLAKSWDKAGSTYVKLANCHLKLDSKHEAAQAYVDAAHCYKKTSTSEAISCLGQAVE MFCDIGRISMAARYNKEIAELYESEPNIEKSIQFYEKAADFFEGEEVTTSANQCKQKVAQFAAQLEQYPKAIEIYEEIARHSLSNNLLKYGVKGHLLNAG ICHLCKGDVIAITNALEKYQDLDPTFAGTREYRLLVDLAGAIDEEDVAKFTDAVKEFDSMTQLDSWKTTLLLRVKEKIKAKELEEDDLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	0	1
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	2.4	0.8717
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	2.6	0.8959
AT2G15220			Plant basic secretory protein ...		Lus10001360 [exp]	4.6	0.8480
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	5.8	0.8730
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	8.5	0.8333
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	8.9	0.8635
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	9.2	0.8577
AT2G34050			unknown protein		Lus10020428 [exp]	9.4	0.7700
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	9.8	0.8211
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	14.7	0.8558

Compare expression of checked genes

Lus10002410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.