Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24470 223 / 7e-72 GATA GATA25, TIFY1, ZIM Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) AT3G21175 200 / 6e-63 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT1G51600 194 / 9e-61 GATA GATA28, TIFY2A, ZML2 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) AT2G46670 57 / 9e-10 CCT motif family protein (.1) AT2G46790 58 / 2e-09 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G60100 57 / 5e-09 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 56 / 1e-08 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G24470 53 / 9e-08 APRR5 pseudo-response regulator 5 (.1) AT5G61380 52 / 2e-07 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT3G20750 49 / 8e-07 GATA GATA29 GATA transcription factor 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032839 [exp] 480 / 2e-173 AT4G24470 231 / 8e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10028166 [exp] 307 / 4e-101 AT4G24470 233 / 4e-72 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10042865 [exp] 186 / 2e-57 AT4G24470 131 / 6e-36 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10023230 [exp] 59 / 1e-09 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10019077 [exp] 59 / 1e-09 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10008878 [exp] 59 / 1e-09 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10015720 [exp] 58 / 2e-09 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10000566 [exp] 58 / 2e-09 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019899 [exp] 57 / 8e-09 AT5G02810 347 / 4e-109 pseudo-response regulator 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110900 [exp] 287 / 5e-97 AT4G24470 253 / 2e-83 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.005G152800 [exp] 284 / 4e-96 AT4G24470 264 / 1e-87 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.007G116550 [exp] 231 / 1e-74 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.010G251600 [exp] 205 / 1e-64 AT1G51600 298 / 9e-101 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.002G110800 [exp] 200 / 2e-62 AT3G21175 230 / 1e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.005G152500 [exp] 185 / 3e-56 AT3G21175 208 / 4e-65 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.007G116700 [exp] 177 / 6e-53 AT3G21175 155 / 3e-44 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042200 [exp] 176 / 8e-53 AT3G21175 171 / 1e-50 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042300 [exp] 66 / 1e-13 AT1G51600 71 / 9e-16 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.015G061900 [exp] 62 / 1e-10 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10002412 pacid=23145805 polypeptide=Lus10002412 locus=Lus10002412.g ID=Lus10002412.BGIv1.0 annot-version=v1.0 ATGTATAATCAGTCTGAGTCTATGGATTTTCCTCCTCATGATCTCGGCGGCGAAGATACTACCGGAGTCGCGGATTCCATGGATCAACACGACCACATTG TGTATGATGATGCTGCTGCTGCCGCTGATGTCCCCGTGGACGACATGTCTCCCGATTCCGTTTATGTTGACGGTGGCGCTGATATCACCAACCAACTTAC TTTGACATTTCGCGGCCAGGTGTATGTCTTTGACGACGTCACTCCCGACAAGGTTCAGGCAGTTTTGTTACTACTCGGAGGCTGTGAAATAAATTCAGGC ACCAATGGTGCGGAAGACACACCTCAATGCCAAAGGGCCACAGGTGTGGACTATCCAGACCGTTCTACACAACATCACAGAGCAGCCTCGTTGAATAGAT TCAGACAGAAGAGAAAAGAGCGATGTTTTGATAAGAAAGTTAGGTACAGTGTTCGGCAAGAAGTTGCTCAAAGGATGCAGCGTAGTAAAGGTCAGTTCAC TTCATCGAAGAAGTCTGATGGATCATGTGGTTTGGATGGCAGTCAGAACTCAGGGCGTGATGACAGTCAGCAAGAAACCTTGTGTACCAATTGTGGCATT AGTTCTAAATCGACTCCAATGATGCGGCGTGGCCCATCTGGTCCAAGGTCTCTTTGCAACGCATGTGGGCTGTTCTGGGCGAATAGGGGAACACTAAGAG ATATGTCGAAGAAAAGCCAAGATCATGCATCGGTGGCAACAGAAAAGAAAAAGGTGGAAGGTGAAGGAGGCAAGGTGGGAGAGGGGATTGATACGCACAA CGAACTAGTCGGTCTCATATCAGCCAGACCATTGAGAGATACTGATGTTTAA
AA sequence Show only first row Show all	>Lus10002412 pacid=23145805 polypeptide=Lus10002412 locus=Lus10002412.g ID=Lus10002412.BGIv1.0 annot-version=v1.0 MYNQSESMDFPPHDLGGEDTTGVADSMDQHDHIVYDDAAAAADVPVDDMSPDSVYVDGGADITNQLTLTFRGQVYVFDDVTPDKVQAVLLLLGGCEINSG TNGAEDTPQCQRATGVDYPDRSTQHHRAASLNRFRQKRKERCFDKKVRYSVRQEVAQRMQRSKGQFTSSKKSDGSCGLDGSQNSGRDDSQQETLCTNCGI SSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDMSKKSQDHASVATEKKKVEGEGGKVGEGIDTHNELVGLISARPLRDTDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10002412 [exp]	0	1
AT3G52270			Transcription initiation facto...		Lus10040084 [exp]	2.0	0.8849
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	4.1	0.8995
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	6.8	0.8942
AT5G03670			unknown protein		Lus10035565 [exp]	9.0	0.8867
AT5G03500			Mediator complex, subunit Med7...		Lus10029326 [exp]	10.7	0.8181
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	11.2	0.8792
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10032839 [exp]	12.1	0.8360
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	12.2	0.8800
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10025058 [exp]	15.0	0.8739
AT5G55150			Protein of unknown function (D...		Lus10007081 [exp]	16.0	0.7713

Compare expression of checked genes

Lus10002412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.