Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003025 [exp] 106 / 1e-27 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10017803 [exp] 97 / 2e-24 ND / Lus10000293 [exp] 85 / 7e-20 ND 48 / 2e-05 Lus10016946 [exp] 84 / 2e-19 ND / Lus10034056 [exp] 82 / 9e-19 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10014851 [exp] 79 / 8e-18 ND 34 / 0.005 Lus10010883 [exp] 77 / 1e-17 ND / Lus10027612 [exp] 77 / 3e-17 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10006887 [exp] 77 / 4e-17 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002413 pacid=23145812 polypeptide=Lus10002413 locus=Lus10002413.g ID=Lus10002413.BGIv1.0 annot-version=v1.0 ATGAACTCCTGGCTATGCATGCTGGTGGTGGTGACTCGGTACCGGTTGAAGCTCCATGTTTCAGACCCTAAGAACGAAACTATATTTGTTCTGCTTGGCC ACGCTGCAGACAGGATTATGCCAATCCCAGATTCTGACCTGGCAATGGCATACCCAGACACTTACGGTGAATTGCCACCGCCTCTACAAGTCATGGTTGG GCAGCATGGCCTTGTGATCCCGCGCGCTCAGCTCATCGCCCAGATGCCGCCTCCTTCTCCACCGCCTCCTCGCTCGCCAAGTCCACCACGTACACATAAT ATCGCAATACCACCAGACCCAATGTGGGTTGCTCCTGTTCCGACCTACATCGAACCCGCTGTTGCACCTCCAGCCAAGGGCTTGCCGATGACAGAACCAG TCTCCCCAAAAAAAACACAATAA
AA sequence Show only first row Show all	>Lus10002413 pacid=23145812 polypeptide=Lus10002413 locus=Lus10002413.g ID=Lus10002413.BGIv1.0 annot-version=v1.0 MNSWLCMLVVVTRYRLKLHVSDPKNETIFVLLGHAADRIMPIPDSDLAMAYPDTYGELPPPLQVMVGQHGLVIPRAQLIAQMPPPSPPPPRSPSPPRTHN IAIPPDPMWVAPVPTYIEPAVAPPAKGLPMTEPVSPKKTQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002413 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	2.0	1.0000
					Lus10001326 [exp]	2.0	1.0000
					Lus10004351 [exp]	3.0	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	3.7	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	4.0	1.0000
					Lus10033811 [exp]	4.2	1.0000
					Lus10027374 [exp]	4.2	1.0000
AT5G02370			ATP binding microtubule motor ...		Lus10041176 [exp]	4.4	1.0000
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10008244 [exp]	4.5	1.0000
AT3G57030			Calcium-dependent phosphotries...		Lus10009015 [exp]	4.9	1.0000

Compare expression of checked genes

Lus10002413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.