Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47240 915 / 0 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT4G23850 620 / 0 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G64400 613 / 0 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 603 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G49430 567 / 0 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT3G05970 390 / 1e-126 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT5G27600 375 / 8e-121 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT1G77590 300 / 6e-92 LACS9 long chain acyl-CoA synthetase 9 (.1) AT2G04350 278 / 1e-83 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G23790 150 / 5e-38 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032840 [exp] 1237 / 0 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10032380 [exp] 617 / 0 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10023832 [exp] 567 / 0 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10021021 [exp] 563 / 0 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10001830 [exp] 563 / 0 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10023089 [exp] 543 / 0 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10004483 [exp] 400 / 6e-130 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 399 / 9e-130 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 385 / 3e-124 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192400 [exp] 993 / 0 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.003G139700 [exp] 629 / 0 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 623 / 0 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 590 / 0 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.010G090200 [exp] 397 / 3e-129 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 387 / 2e-125 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.002G084100 [exp] 302 / 7e-93 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 296 / 2e-90 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169400 [exp] 262 / 2e-77 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169600 [exp] 223 / 3e-64 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10002414 pacid=23145809 polypeptide=Lus10002414 locus=Lus10002414.g ID=Lus10002414.BGIv1.0 annot-version=v1.0 ATGATGAAGGTTTTTGCAGCAGAGGTAAAGGAAGGGAAACAAGGTGAAGATGGGAAACCATCAGTTGGTCCAATTTACCGTAATCTGCTCTCCAAGCACG ATTTCCCTCCTCCTCATCCCAATATCTCCACTGCTTGGGACATTTCCAGTGTATCTGTGAAGAAGCATCCTGATAATAAAATGCTGGGATGGCGTGAATT TGTTAATGGGAAGTTTGGACCATACATCTGGAAAACTTATAAGCAAGTGTTTGAGGAAGTTGTGAACATTGGCTCTGCATTGAGAGCATCTGGTGCTGAA CCAGGATGTCGAGTTGGGATTTACGGAGCAAACTGCCCCGAATGGACTATCGCAATGGAGGCTTTTTCTGCTCACAGTTTGATCTGCGTACCACTCTATG ATACTCTTGGTCCAAATGCAGTCAACTTTATAATAGATCATGCCGAAGTGGATTTCGTTTTCATCCAGCACAAAAAAGTTAAAGACTTACTGAATCCTAG CTGCAAAGCTGCTGCACGTCTTAAAGCTGTTGTTTGCTTCTCCTCCCTGACAAATGACGACAAGGATAAAACAGCTGAGCGAGGGATAAAACCCTACTCT TGGCAAGAGTTCCAAGTCATGGTTAGGACTGAGAATCCAGCCGACATAGTGCCACCTCAGCAGATGAACATCTGCACGATTATGTACACAAGCGGCACCA GTGGAGATCCCAAAGGTGTTGTGCTGACACATGAGACAGTTGCATATTTCGTAAGGGGTATGGATTTGTTCATGGAACAGTTTGATGACAAGATGACAGT AGATGACGTGTACTTATCGTTCCTACCGCTCGCTCATGTCCTTGACCGTGTGATAGAGGAGTACTTCTTCAACAAAGGTGCTTCAGTTGGCTACTACCAT GGGGATTTAAATGCATTGAGGGGTGATTTAATGGAGCTGAAGCCAACATTCTTAGCTGGAGTACCTCGAGTCTTTGAAAAGATATACGAAGGCAAGAATT TTGCTTGTATTAAGAAAGCATTAGACGAACTTAATCCAATCCGGAGGAGAGTTTTCGATCTTCTTTACAGATACAAGCTAGGTTGGATGAATATGGGTTT GAAGCAAAAGTACGCCTCACCATTGGCTGATCTACTAGCTTTTAGAAAGGTGAAGGCTAAATTGGGAGGTAGATTTAGGCTAATGGTATCAGGAGGAGCA CCGCTGAGCTCTGAGGTGGAAGAATTCTTGAGGGTGACTTGCTGTGCTTTTGTGGTTCAAGGCTATGGACTTACAGAAAGCTGTGGTCCAGCAACACTGG GTTTCCCAGACGAAATGTGCATGATGGGAGCTGTGGGAAGTCCAGCAGTGTACAACGAGATTAGGCTGGAAGAGGTTGCTGATATGGGGTACCACCCACT TGGGAATCCTCCTTGTGGAGAGATATGTGTACGAGGAAAGACTATGTTTTCTGGTTACTATAAGAACCCTAAACTCACTACTGAATCCATTCAGGATGGA TGGTTTCACACTGGTGACATTGGGGAAATTCAAGGAAATGGGGTTATAAAAGTGATTGACAGGAAGAAGAATCTGATAAAGCTGTCACAAGGAGAGTACA TTGCTTTGGAGCATTTGGAGAATGTGTATGGGATCCCTCCCATTATTGACGATATATGGGTGTATGGAGACAGCTTCAAAGCAATGCTGGTAGCAGTAGT TGTGGTTGAGCAAGACAATGCAATGAAATGGGCTACTGTAAATGATGTCATCCCTTCTTCCTTTGATGAACTCTGTTCCCTTCAACAGCTTAGGCAACAC ATATTGTTGGACCTCAAATCTACTGCTGTCAGAAATAAGCTGAGAGGGTTTGAATACATAAAGGAATCAAAACCCTTCGACATGGAAAAAGAACTGGTGA CTGCAACACTGAAGAAGAAAAGAAACAAGCTGCTCAATTATTACCAGCCTCAGATTGATCAACACTACCTCAAACTGGGTGCTGCAGGTGGAGGAGGACG TGCACCTTGA
AA sequence Show only first row Show all	>Lus10002414 pacid=23145809 polypeptide=Lus10002414 locus=Lus10002414.g ID=Lus10002414.BGIv1.0 annot-version=v1.0 MMKVFAAEVKEGKQGEDGKPSVGPIYRNLLSKHDFPPPHPNISTAWDISSVSVKKHPDNKMLGWREFVNGKFGPYIWKTYKQVFEEVVNIGSALRASGAE PGCRVGIYGANCPEWTIAMEAFSAHSLICVPLYDTLGPNAVNFIIDHAEVDFVFIQHKKVKDLLNPSCKAAARLKAVVCFSSLTNDDKDKTAERGIKPYS WQEFQVMVRTENPADIVPPQQMNICTIMYTSGTSGDPKGVVLTHETVAYFVRGMDLFMEQFDDKMTVDDVYLSFLPLAHVLDRVIEEYFFNKGASVGYYH GDLNALRGDLMELKPTFLAGVPRVFEKIYEGKNFACIKKALDELNPIRRRVFDLLYRYKLGWMNMGLKQKYASPLADLLAFRKVKAKLGGRFRLMVSGGA PLSSEVEEFLRVTCCAFVVQGYGLTESCGPATLGFPDEMCMMGAVGSPAVYNEIRLEEVADMGYHPLGNPPCGEICVRGKTMFSGYYKNPKLTTESIQDG WFHTGDIGEIQGNGVIKVIDRKKNLIKLSQGEYIALEHLENVYGIPPIIDDIWVYGDSFKAMLVAVVVVEQDNAMKWATVNDVIPSSFDELCSLQQLRQH ILLDLKSTAVRNKLRGFEYIKESKPFDMEKELVTATLKKKRNKLLNYYQPQIDQHYLKLGAAGGGGRAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10002414 [exp]	0	1
AT5G56850			unknown protein		Lus10032679 [exp]	1.4	0.9191
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10021614 [exp]	3.5	0.9089
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10032018 [exp]	4.2	0.9016
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	6.0	0.9030
AT1G09310			Protein of unknown function, D...		Lus10010904 [exp]	9.5	0.9012
AT2G30170			Protein phosphatase 2C family ...		Lus10031355 [exp]	10.5	0.8871
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10011683 [exp]	10.8	0.8695
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	11.2	0.9102
AT3G14980			Acyl-CoA N-acyltransferase wit...		Lus10026374 [exp]	12.7	0.8511
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	13.6	0.8936

Compare expression of checked genes

Lus10002414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.