Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002415 pacid=23145810 polypeptide=Lus10002415 locus=Lus10002415.g ID=Lus10002415.BGIv1.0 annot-version=v1.0 ATGACGGAAGGTCACTTGACTTATCCCAAAATTGCGAGGAGGTCACAGGACTTCCTGGAAAGACGTTCCAGTCATCCTTCTCCTCAGGCGAGACTCGCCG TCGCTGGCGAGGATTTCCAAAATCCGGGGAGGTCCCGACGAGCTCCAAATTTGCTGGAAACGTGGATTCCGCTGTCGACGAGTTTGCCCACCTTCCGACG AGTTCTTCCCCCTCCTTGGAAAGTGATTTTCGACCATCACGAGCCCACTCTTCTCGCCGGAGCACTAGGGACCTTCACCGTCCCCGAGCTCTTATTCTCC GCCGAAGGTGCTGTCGACTCCTCTCTCTCGTGTCGTAGACGCCGCCATCTCTCTCTTGCAAAGCCAATAGTCACTGAAGAAACGACCACCACCGATCCGG CGCTCTCTATCTAA
AA sequence Show only first row Show all	>Lus10002415 pacid=23145810 polypeptide=Lus10002415 locus=Lus10002415.g ID=Lus10002415.BGIv1.0 annot-version=v1.0 MTEGHLTYPKIARRSQDFLERRSSHPSPQARLAVAGEDFQNPGRSRRAPNLLETWIPLSTSLPTFRRVLPPPWKVIFDHHEPTLLAGALGTFTVPELLFS AEGAVDSSLSCRRRRHLSLAKPIVTEETTTTDPALSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002415 [exp]	0	1
					Lus10016269 [exp]	13.1	0.7215
					Lus10006458 [exp]	15.8	0.6724
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	23.3	0.7025
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	37.5	0.6582
					Lus10008346 [exp]	48.2	0.5465
					Lus10012012 [exp]	53.4	0.6340
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10021998 [exp]	57.2	0.5965
					Lus10009774 [exp]	60.9	0.6322
AT3G01490			Protein kinase superfamily pro...		Lus10030868 [exp]	65.6	0.5358
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	66.2	0.5600

Compare expression of checked genes

Lus10002415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.