Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24520 441 / 2e-151 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT4G30210 400 / 2e-135 AR2, ATR2 P450 reductase 2 (.1.2) AT3G02280 146 / 2e-39 Flavodoxin family protein (.1) AT5G66190 54 / 5e-08 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 52 / 2e-07 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT1G30510 46 / 2e-05 ATRFNR2 root FNR 2 (.1.2.3) AT4G05390 41 / 0.0008 ATRFNR1 root FNR 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032842 [exp] 515 / 0 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025485 [exp] 395 / 3e-137 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 379 / 4e-127 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 373 / 7e-125 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 371 / 3e-124 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10017589 [exp] 117 / 5e-29 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10028451 [exp] 55 / 4e-08 AT5G66190 596 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10041904 [exp] 54 / 5e-08 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10038538 [exp] 43 / 0.0002 AT4G05390 624 / 0.0 root FNR 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G153800 [exp] 420 / 3e-143 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 409 / 5e-139 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.018G092100 [exp] 404 / 5e-137 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.002G106566 [exp] 345 / 8e-120 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.004G101100 [exp] 127 / 1e-32 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.007G057200 [exp] 54 / 7e-08 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.005G112900 [exp] 53 / 1e-07 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 47 / 8e-06 AT4G05390 635 / 0.0 root FNR 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00667 [flax] [poplar] FAD_binding_1 FAD binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002416 pacid=23145808 polypeptide=Lus10002416 locus=Lus10002416.g ID=Lus10002416.BGIv1.0 annot-version=v1.0 ATGGAAGCCCCAATCTACAAATCTATGGTTATCTTTACGGGGGAGACGAGTGGATCCACCGACGAAAATAAGACCACCGATCTGGGCGTTTATGCTGGAA ATGGTGAGGAAATTGTTGAAGAAGTAGGGAAGTTATTGGGTCAACCTTTAGATTTGTTGTTCTCTATTCATGCGGATAAAGAAGATGGGTCACCCCTGGC AGCATCTTTGGCACCTCCTTTCCCAGGTCCTTGTACCGTGCGTTTGGCATTTGCACGTTATGCAGATATCTTGAACTCTCCTCGGGAGTCTGCTTTGATT ACCTTGGCTGCTCATGCAAGTGAACCGTCTGAGGCAGAGAGGCTTACCTTTTTATCTTCGCCACAGGGAAAGAATGAATACTCGCAATGGGTTGTTGCTA GTCAAAGAAGTCTCCTTGAGGTAATGGCCGAGTTTCCATCTGCAAAACCCCCTCTTGGCGTATTTTTTGCAACTGTGGCTCCTCGACTTCAGCCTCGTTA CTATTCAATTTCATCTTCTCCTAGATTTGCTCCTAATAGAGTCCATGTGACCTGTGCTTTAGTAGATGAACCAACTCCAACTGGTAGAATTCACAAAGGA GTGTGTTCAACATGGATGAAGAATGCTGTTTCTCTCGAGAAAAGCCAAGATTGTAGCTCGGCTCCCGTTTTCATCAGGACATCTAACTTCACGTTACCCG CTGATCCTTCAACTCCAATTATTATGGTGGGACCTGGAACAGGGTTGGCACCTTTCCGAGGATTTCTACAGGAAAGAATGGCGCTGAAAGAGGAAGGCCA TCAGCTTGGTAGTGCTTTGCTATTCTTCGGATGCAGAAATAGACGGATGGATTTTATATACGAGGAAGAGCTAAATAGATTTGTGGAACAAGGAGCACTG AGTGAACTGGTGATTGCCTTGTCAAGGGAGGGGCCATAG
AA sequence Show only first row Show all	>Lus10002416 pacid=23145808 polypeptide=Lus10002416 locus=Lus10002416.g ID=Lus10002416.BGIv1.0 annot-version=v1.0 MEAPIYKSMVIFTGETSGSTDENKTTDLGVYAGNGEEIVEEVGKLLGQPLDLLFSIHADKEDGSPLAASLAPPFPGPCTVRLAFARYADILNSPRESALI TLAAHASEPSEAERLTFLSSPQGKNEYSQWVVASQRSLLEVMAEFPSAKPPLGVFFATVAPRLQPRYYSISSSPRFAPNRVHVTCALVDEPTPTGRIHKG VCSTWMKNAVSLEKSQDCSSAPVFIRTSNFTLPADPSTPIIMVGPGTGLAPFRGFLQERMALKEEGHQLGSALLFFGCRNRRMDFIYEEELNRFVEQGAL SELVIALSREGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Lus10002416 [exp]	0	1
					Lus10005396 [exp]	5.4	0.9223
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10003650 [exp]	7.6	0.9223
					Lus10003840 [exp]	9.3	0.9223
					Lus10012429 [exp]	10.8	0.9223
					Lus10022573 [exp]	12.0	0.9223
					Lus10000784 [exp]	13.2	0.9223
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	14.2	0.9223
AT5G48540			receptor-like protein kinase-r...		Lus10015472 [exp]	15.2	0.9223
AT3G05950			RmlC-like cupins superfamily p...		Lus10029010 [exp]	16.2	0.9223
					Lus10006661 [exp]	17.0	0.9223

Compare expression of checked genes

Lus10002416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.