Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02550 59 / 4e-10 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G36659 56 / 4e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G23350 49 / 7e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G47340 49 / 1e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G53840 45 / 4e-05 ATPME1 pectin methylesterase 1 (.1) AT3G14300 45 / 6e-05 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001448 [exp] 218 / 3e-72 AT1G23350 48 / 7e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10025021 [exp] 187 / 8e-57 AT3G14300 63 / 2e-10 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10010002 [exp] 184 / 3e-54 AT3G14300 / A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10031132 [exp] 44 / 6e-05 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 42 / 0.0002 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10037458 [exp] 42 / 0.0004 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119200 [exp] 115 / 1e-30 AT1G02550 97 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 102 / 1e-25 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194900 [exp] 101 / 2e-25 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G119400 [exp] 102 / 1e-24 AT1G02550 78 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G195000 [exp] 88 / 2e-20 AT1G02550 76 / 3e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G010464 [exp] 47 / 7e-06 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 45 / 4e-05 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10002420 pacid=23179445 polypeptide=Lus10002420 locus=Lus10002420.g ID=Lus10002420.BGIv1.0 annot-version=v1.0 ATGACAACGAACCAACCAGAACACAAACACATGAACAGCCAAATAGAAAAGAAATTAGAAGATGACGGAGAAAGTGATGGCGATAAAGAAAAATCAAAAA ATAAGGAGAAGAGTAAAGATGATGAAGAGAAAAAGAAATCCAAAGAAGACGATTCAATAGAGAAAAATGACGATGATGAAACAAAAAAGAAATCAAAAGA CGATAGAGAAAAAGATGACGGTGAAGGTAAAGAAGAAAAATCAAAAGATAAGGAGAAAAGTGAAGATGATGAAGAAAAAAAGAAATTCGAAGAAGATGGT TCAGAAGAAGAAAATGATAGCGATGAAAACAAAAAGGAATCAGAAGATTATGGAGAAAGAGACGATGATGAAGAAAAACAAAACAAATCAAAAGACGATA GTGAAACAGAGAAAAATGAAAAGTTAACATCAACAAAAGATTTCGTTAGTGTAAAAAAAATATGTGGCACAACAGAATATCCAAAAGACTGTTTAAACTC AATCTCACCTTTCATATCGGGGGCCACAGATCATGTGTCGATATTGAAGATGGAGATCAAGGCAATTAAAAAGGGGTTTGTAACATCAATTGCAAAGGCA AAGAAGATGAGGAAGGATACAAACCGGAAGATAGATAAGAGCACAATTGATTCATGTGTCGAGAACTTCAATAGCGGTCTCACGGATCTTGAGAATGCGG TAGATGCGATAAATGACCACGATCGATACTCATTACAGATCATGTTGAGTTCCATTCTAACGTACATTTCAACGTGTGAGGATGCAATAGGCGAGGATCA AGACTCTTCCCTCCCAAGCATAACTCTAATGGAACACAAGTTGACAAACCTTGTTACCAATTGCATGGATTTGGCCGACCAATTTAATTGA
AA sequence Show only first row Show all	>Lus10002420 pacid=23179445 polypeptide=Lus10002420 locus=Lus10002420.g ID=Lus10002420.BGIv1.0 annot-version=v1.0 MTTNQPEHKHMNSQIEKKLEDDGESDGDKEKSKNKEKSKDDEEKKKSKEDDSIEKNDDDETKKKSKDDREKDDGEGKEEKSKDKEKSEDDEEKKKFEEDG SEEENDSDENKKESEDYGERDDDEEKQNKSKDDSETEKNEKLTSTKDFVSVKKICGTTEYPKDCLNSISPFISGATDHVSILKMEIKAIKKGFVTSIAKA KKMRKDTNRKIDKSTIDSCVENFNSGLTDLENAVDAINDHDRYSLQIMLSSILTYISTCEDAIGEDQDSSLPSITLMEHKLTNLVTNCMDLADQFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G36659			Plant invertase/pectin methyle...		Lus10002420 [exp]	0	1
AT4G01575			serine protease inhibitor, Kaz...		Lus10010094 [exp]	1.0	0.8257
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	42.6	0.6665
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10007324 [exp]	44.9	0.6663
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10005081 [exp]	47.2	0.6658
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	50.1	0.6208
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10015155 [exp]	51.0	0.6651
					Lus10011636 [exp]	56.9	0.6643
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	59.2	0.6643
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	61.5	0.6643
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	63.6	0.6643

Compare expression of checked genes

Lus10002420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.