Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01950 469 / 1e-161 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 451 / 1e-154 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT1G06520 369 / 8e-122 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT5G06090 327 / 2e-106 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT3G11430 318 / 8e-103 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT4G00400 308 / 5e-99 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 306 / 3e-98 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT2G38110 286 / 1e-90 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT3G11325 198 / 4e-58 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001449 [exp] 851 / 0 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1) Lus10020767 [exp] 377 / 2e-125 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010934 [exp] 375 / 2e-124 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10029839 [exp] 370 / 1e-123 AT4G01950 449 / 9e-155 glycerol-3-phosphate acyltransferase 3 (.1) Lus10031396 [exp] 359 / 7e-118 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010741 [exp] 323 / 8e-105 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 323 / 1e-104 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 309 / 2e-99 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 302 / 1e-96 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192600 [exp] 532 / 0 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1) Potri.005G202200 [exp] 398 / 2e-133 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.006G198100 [exp] 327 / 2e-106 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G063900 [exp] 327 / 3e-106 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.008G058200 [exp] 315 / 6e-102 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.010G201200 [exp] 311 / 2e-100 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.014G085500 [exp] 311 / 3e-100 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.016G113100 [exp] 300 / 5e-96 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 294 / 1e-93 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10002421 pacid=23179452 polypeptide=Lus10002421 locus=Lus10002421.g ID=Lus10002421.BGIv1.0 annot-version=v1.0 ATGATCCAAACGGCGCCGTTCTTCCTCTACTTCATCCGCCTCGTATTCCGTCAATTCCGTAACCCAACTAAACCCTTCCTCCGTCCAACTCTCACTACCA AACCATACCAAAAGTTCTCCTCCTTCAACGTGAACGACCACGTGCACCCCACAGCCGTAGTAATCGACGTCGAAGGAGCGCTTTTAAAGTCAACATGCTT GTTCCCATACTTCATGATCGTGGCTTTCGAAGCCGGAAGCTTCCTCAGAGCTTTACTCCTCCTCCTCCTTTACCCGATACTTCGCATACTAGGAGGAGGT GGATCGGTGAAGCTGATGACGTTCGTCAGCTTCTTCGGGTTAAGGAAGGATGGGTTTAAAGTAGGGAGAAGCGTGCTGCCCAAGTTTCTTCTCGACGACG TCGGTTTGGAGGCGTTTGAGACGGTGAATAAGAAGAAGAGGAAGAAGGTGGTGGTGGGTGTTTGTGGGAAGCTGCCGAGGGTTATGGTGGAGAGCTTTTT GAAGGATTACTTGGAGTTCGATCATGTTGTCGCCGGGGAGATTAAGGTTGTCGGCGGCTATTTTTTGGGGACTTTAGATGATGTTCATAATGATCAGAAT TATGTCCGGAGGTCTATCAGCGGTGATGCTCATCATGCTATTGGGATTGCTCGCTTCACTAGGAATTTGGATGATCATCCTATTTTTGCACTTTGCAAGG AGATTTACTTGGTGAGGACAGACAAGAATAGCTGGCGAGATCTTCCTCCACACAGATACCCTAACCCACTCATCTTCCACGACGGCCGTCTCGCCGTCCG GCCAACGTTCGTCCCCTCCGTCGTTGTCCTCATGTGGACTCCCTTCGGCTTCCTCCTCGCTTTAGTCCGACTCGCCGTAGCCCTCACGCTCCCTTTCAGC GCGTCAATCCCGGTCCTCACATTCCTCGGCTTCCGCACCGTCATCTCCGGAGAAAAAGGAAAAGTTTCAGCTCTGTCGTCGTTGAATAAAAAAGGTCAAC TCTACGTGTGCAACCACCGGACACTGCTGGACCCACTCTACCTATCCTTCGCACTGAAGAGCAGCTTCACTGCGGTTACCTACAGCATAAGTCGGGTTTC GGAGATGCTGTCACCAATCAGAACCGTCCGATTGAGCAGGGACCGTGCTCGAGACGCGGAGATGATGGAAGGGAAGCTGCTGCGTCAACAGGATTTGGTG GTTTGCCCTGAAGGCACCACGTGTCGAGAACCGTATTTGTTGAGGTTTAGTCCGTTGTTCGCCGAGTTGACCGACGAGATTGTCCCGGTCGCGCTGGATG TCCACGTGGACATGTTTTACGGGACCACTGCCAGCGGGCTCAAGTGTCTGGACCCGTTGTTCTTCCTCCTGAACCCTAGGCCCGAGTATTCCATTCGGGT ACTTGACCCGGTTTCGACCCGAGGGCAGTCTTCTTATGACGTCGCTAACTTTGTACAGCGGGAGATTGGGAATGTGTTGGGGTTTCAGTGTACGAAGCTT ACGCGGAAAGACAAGTACTTGGTTTTGGCGGGTAATGAAGGGATCCATAGACGCTGA
AA sequence Show only first row Show all	>Lus10002421 pacid=23179452 polypeptide=Lus10002421 locus=Lus10002421.g ID=Lus10002421.BGIv1.0 annot-version=v1.0 MIQTAPFFLYFIRLVFRQFRNPTKPFLRPTLTTKPYQKFSSFNVNDHVHPTAVVIDVEGALLKSTCLFPYFMIVAFEAGSFLRALLLLLLYPILRILGGG GSVKLMTFVSFFGLRKDGFKVGRSVLPKFLLDDVGLEAFETVNKKKRKKVVVGVCGKLPRVMVESFLKDYLEFDHVVAGEIKVVGGYFLGTLDDVHNDQN YVRRSISGDAHHAIGIARFTRNLDDHPIFALCKEIYLVRTDKNSWRDLPPHRYPNPLIFHDGRLAVRPTFVPSVVVLMWTPFGFLLALVRLAVALTLPFS ASIPVLTFLGFRTVISGEKGKVSALSSLNKKGQLYVCNHRTLLDPLYLSFALKSSFTAVTYSISRVSEMLSPIRTVRLSRDRARDAEMMEGKLLRQQDLV VCPEGTTCREPYLLRFSPLFAELTDEIVPVALDVHVDMFYGTTASGLKCLDPLFFLLNPRPEYSIRVLDPVSTRGQSSYDVANFVQREIGNVLGFQCTKL TRKDKYLVLAGNEGIHRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	0	1
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	1.4	0.9744
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027428 [exp]	2.2	0.9591
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	2.4	0.9640
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	2.6	0.9551
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	4.0	0.9501
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	4.2	0.9560
AT5G23160			unknown protein		Lus10013437 [exp]	6.7	0.9428
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	8.0	0.9614
AT3G06070			unknown protein		Lus10034044 [exp]	11.3	0.9290
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	15.6	0.9382

Compare expression of checked genes

Lus10002421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.