Plant FIBer expression Database

Lus10002423 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05330 54 / 1e-09 ATN ,ATTAN A. THALIANA TAN1, TANGLED, cyclin family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029912
[exp]
119 / 3e-33 AT3G05330 280 / 2e-90 A. THALIANA TAN1, TANGLED, cyclin family (.1)
Lus10004488
[exp]
113 / 5e-31 AT3G05330 273 / 7e-88 A. THALIANA TAN1, TANGLED, cyclin family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G033200
[exp]
65 / 3e-13 AT3G05330 335 / 1e-112 A. THALIANA TAN1, TANGLED, cyclin family (.1)
Potri.013G022600
[exp]
64 / 9e-13 AT3G05330 360 / 4e-122 A. THALIANA TAN1, TANGLED, cyclin family (.1)
PFAM info
Representative CDS sequence
>Lus10002423 pacid=23179455 polypeptide=Lus10002423 locus=Lus10002423.g ID=Lus10002423.BGIv1.0 annot-version=v1.0
ATGTCGCTGCCAGCAATGTTGCTAAGGGAAACGATGCGGGAAATCCTCCAAGCAAGCCAATTCTTTAAAAAGATCGTTGCATTAGTCAGAGGAACCACCA
AATCCGTTGATGATGAACCTAAAACTCCATTGACGTCGACACAAAAAAGAAAAAGGCCGGAAAACCACCACTCTGCTTTCAAATCCAAACGCCACGAGGA
GAAGAAGCAGAACCAGCAACTCGGGTTCGGATGCCAAGAATTCATTGTCTGTGTCAGGTGGATTTTGCAAGGAAGTATTAAGCAAGGTAAAGATCTGAGC
CTTTGCAAGATACTTAAGACACTTGACAGTCCACAACGAGCATTTAAGCTGGCAAAGCCTTGTTAA
AA sequence
>Lus10002423 pacid=23179455 polypeptide=Lus10002423 locus=Lus10002423.g ID=Lus10002423.BGIv1.0 annot-version=v1.0
MSLPAMLLRETMREILQASQFFKKIVALVRGTTKSVDDEPKTPLTSTQKRKRPENHHSAFKSKRHEEKKQNQQLGFGCQEFIVCVRWILQGSIKQGKDLS
LCKILKTLDSPQRAFKLAKPC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G05330 ATN ,ATTAN A. THALIANA TAN1, TANGLED, cyc... Lus10002423
[exp]
0 1
AT5G13160 PBS1 avrPphB susceptible 1, Protein... Lus10032010
[exp]
10.0 0.8035
AT2G17080 Arabidopsis protein of unknown... Lus10012368
[exp]
16.0 0.7939
AT5G58380 PKS2, CIPK10, S... SNF1-RELATED PROTEIN KINASE 3.... Lus10014163
[exp]
17.8 0.8007
AT5G19450 CPK8, CDPK19 calcium-dependent protein kina... Lus10030134
[exp]
19.1 0.8020
AT1G44750 ATPUP11 purine permease 11 (.1.2.3) Lus10012606
[exp]
24.5 0.7585
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Lus10000559
[exp]
26.1 0.7787
AT5G60920 COB COBRA-like extracellular glyco... Lus10017861
[exp]
26.6 0.7746
AT5G50600 ATHSD1 hydroxysteroid dehydrogenase 1... Lus10032556
[exp]
33.3 0.7361
AT4G27570 UDP-Glycosyltransferase superf... Lus10039236
[exp]
35.1 0.7716
AT5G48290 Heavy metal transport/detoxifi... Lus10016061
[exp]
36.4 0.7744

Lus10002423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.