Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 72 / 3e-15 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G01580 66 / 2e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 65 / 4e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 56 / 8e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 41 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G06160 40 / 0.0003 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT4G31640 39 / 0.0009 B3 REM5 transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010759 [exp] 161 / 6e-49 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 159 / 4e-48 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 164 / 9e-48 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025669 [exp] 99 / 1e-24 AT3G18990 100 / 1e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 75 / 5e-16 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10021007 [exp] 70 / 2e-14 AT3G18990 87 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 69 / 2e-14 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012046 [exp] 69 / 5e-14 AT3G18960 82 / 7e-18 AP2/B3-like transcriptional factor family protein (.1) Lus10012038 [exp] 69 / 8e-14 AT3G18990 67 / 5e-12 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 88 / 9e-21 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 74 / 1e-15 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 72 / 3e-15 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 72 / 4e-15 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G057101 [exp] 69 / 2e-14 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 67 / 3e-13 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 57 / 8e-10 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 46 / 3e-06 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 43 / 5e-05 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035500 [exp] 39 / 0.001 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10002425 pacid=23179448 polypeptide=Lus10002425 locus=Lus10002425.g ID=Lus10002425.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCTTCCATAACCAAACCACACACTAGTTTCTTCAGAGTCGTCCTTCCGTACAAACTCCATCAAAAGAAGCTGAAGCTGCCCTTGA AATTTGTTCGAAGACACGGATCGGAAATTTCAGCCTCTGCCAAACTGTCCTTACCAAATGGTCATGCATGCAACGTTGGTGTGGAGAAGAGGAGGGAAAA TGGCCGTAAGGATGAGGAGATTTGGTTAAGCAATGGTTGGGGTGAATTTCTGGAACATCTTTCCATTTCCAAAGGATGCTTTGTGGTGTTTAAGTACAGA GGACACTCTGCTTTCGACGTCGAGATTTTCGACCTCGCCACTTGCTCAATATCCTATCCTGATCCTCCTCCTCATCATGATCATCAACAAAGTGGTTCTC CTGAGAATGTGAGTTCGCCAGAAATTATCGCCATCTCGGACGACGAGGACGAAAAATATGAGAAATTGGTGGAAAGTCTAAAAGCAAGCGGGATAGTAAC TAGTCGTTGGTTCAAGAGGAGGATAAGGATGATGTGA
AA sequence Show only first row Show all	>Lus10002425 pacid=23179448 polypeptide=Lus10002425 locus=Lus10002425.g ID=Lus10002425.BGIv1.0 annot-version=v1.0 MASSSSSITKPHTSFFRVVLPYKLHQKKLKLPLKFVRRHGSEISASAKLSLPNGHACNVGVEKRRENGRKDEEIWLSNGWGEFLEHLSISKGCFVVFKYR GHSAFDVEIFDLATCSISYPDPPPHHDHQQSGSPENVSSPEIIAISDDEDEKYEKLVESLKASGIVTSRWFKRRIRMM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10002425 [exp]	0	1

Compare expression of checked genes

Lus10002425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.