Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02060 1167 / 0 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G16440 335 / 3e-103 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G46280 320 / 3e-98 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G44635 319 / 3e-97 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT1G44900 305 / 4e-91 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 296 / 7e-90 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT3G09660 255 / 3e-74 MCM8 minichromosome maintenance 8 (.1) AT2G14050 220 / 3e-62 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001452 [exp] 1418 / 0 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10038384 [exp] 325 / 2e-99 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 323 / 9e-99 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10017491 [exp] 322 / 3e-98 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025389 [exp] 321 / 4e-98 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 321 / 5e-98 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10015267 [exp] 328 / 6e-98 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009052 [exp] 299 / 5e-87 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10019592 [exp] 275 / 6e-82 AT2G07690 1075 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121000 [exp] 1249 / 0 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 332 / 1e-102 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G074000 [exp] 332 / 3e-102 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.009G121500 [exp] 330 / 2e-101 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.018G112800 [exp] 309 / 2e-94 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G188700 [exp] 298 / 1e-90 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G070500 [exp] 300 / 2e-89 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G131900 [exp] 251 / 1e-72 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 216 / 1e-60 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 78 / 9e-18 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10002427 pacid=23179437 polypeptide=Lus10002427 locus=Lus10002427.g ID=Lus10002427.BGIv1.0 annot-version=v1.0 ATGACGAAACGTCTGGACCTCGCTGCCGACAAAGATTTCGCAAGGGAGTTTCTGAGCAACCACACTGACCTAAATGGCGAAGCTAAGTACATGAACATCC TTCAAGATGTTGCCAATCACAAGACTCGAGCTGTTCAAATTGACCTCGATGACCTATTTAACTGGACAACAGACTTTGACAACGAATTCACTAAACGAGT TACTGAGAATACCCGACGATACATAGGGATATTTGCCTCTGCAATTGATGAACTGATGCCTGAACCCACCGAGACCTTTCCAGATGATGACCATGACATC CTAATGACGCAGAGGTCTGAGGAGCCAAACGAGAACACTGATGGTTCTGATCAGCAGCAGAAGATGCCTCCTGAAATCAAGCGTTTCTACGAGGTTTATA TCAAAGCAGCTTCAAAGGACCAGAAGATGAGTATCAGAGAGGTCAAGGCTGCAAATATCGGCCACCTTGTGAAGATTTCTGGTATTGTGACGCGTTGTTC AGATGTCAAGCCGCTGATGCAGGTTGCTGTGTATACCTGTGAAGAATGTGGTTTTGAAATATACCAGGAAGTAACTGCCCGGGTGTTCATGCCTTTGTTT AAATGCCCATCCAAGCGATGCGTGACAAACAATAGAAATGGAAATCTTATTCTTCAACTCAGGGCATCTAAGTTTCTGAAGTTTCAGGAGGCCAAAATTC AGGAGCTGGCAGAACATGTTCCAAAAGGCCATATTCCACGGTCCATGACAGTTCATTTTAGAGGGGAGCTGACTAGAAGGGTAGCACCTGGTGATGTAGT TGAATTGTCAGGAATCTTCCTTCCAATTCCTTACACTGGATTCAGAGCAATGCGTGCTGGCTTAGTTGCTGATACATACTTAGAGGTCATGTCCGCCACT CATTCCAAGAAAAGATACGAAGAGTATGAACAAGGAGGGGATGAGGAAGAACAGATTAGGAAGTTAGCTGAAGATGGTGAAATATATAATAAGTTGGCAC GCTCTTTGGCACCTGAAATTTATGGTCATGAAGATATTAAGAAAGCTTTACTACTACTCCTTGTGGGTGCTCCTCATAGGAAATTGAAGGATGGGATGAA GATCAGAGGAGATCTACATGTATGTCTTATGGGTGACCCTGGAGTGGCAAAGAGTCAGCTTCTGAAGCACATAATCAATGTAGCACCCAGGGGAGTGTAT ACTACTGGCAAAGGAAGCAGTGGCGTTGGTCTAACTGCAGCTGTTCAGAGAGATCCAGTTACAAATGAAATGGTCTTGGAAGGCGGCGCTTTGGTGCTTG CTGATATGGGTATATGTGCCATTGACGAGTTTGATAAGATGGATGAATCAGATCGTACTGCAATTCATGAAGTTATGGAACAGCAGACTGTCAGCATTGC AAAAGCTGGGATCACCACTTCCCTTAATGCAAGAACTGCTGTTCTTGCTGCAGCTAATCCAGCATGGGGAAGATACGACATGCGGAGAAGCCCGGCTGAA AACATCAATTTACCACCTGCTCTTCTATCAAGATTTGATCTCCTATGGTTGATTCTTGATCGAGCAGATATGGATGCGGATCTTGAACTGGCTAGGCATG TTGTTTATGTGCACCAGAACAAAAAATCTCCTGCTCTCGGATTTGCTCCTCTTGAACAATCTGTACTCCGTGCATATATTTCTGCTGCAAGAAGACTCTC GCCATACGTCCCCAAGGACCTTGAGGAGTATATTGCCACTGCATACTCCAGTATTCGGCAAGAAGAGGCCAAATCAAATGCTCCTCATTCTTATACTACC ATTCGAACCCTGCTTAGCATTCTCCGGATATCAGCTGCCTTAGCAAGGCTCCGATTCTCAGAAACAGTGGCACAGAGCGATGTGGACGAGGCACTGAGAT TGATGCAAATGTCAAAATTCTCATTGTATTCCGATGAACGTAAGAAATCTGGTCTGGATGCCATCTCTGATATTTACTCAATATTGAGGGATGAAGCTGC AAGGGCGGACAGAATGGATGTGAGCTATGCCGATGCTCTTAACTGGATTTCTAGAAAGGGTTACAGTGAAGCTCAGCTGAAAGAATGCTTAGAAGAATAT GCTGCTCTTAATGTCTGGCAGATTCACCACCGCACCTTTGACATCCGCTTCATCGATGCCTGA
AA sequence Show only first row Show all	>Lus10002427 pacid=23179437 polypeptide=Lus10002427 locus=Lus10002427.g ID=Lus10002427.BGIv1.0 annot-version=v1.0 MTKRLDLAADKDFAREFLSNHTDLNGEAKYMNILQDVANHKTRAVQIDLDDLFNWTTDFDNEFTKRVTENTRRYIGIFASAIDELMPEPTETFPDDDHDI LMTQRSEEPNENTDGSDQQQKMPPEIKRFYEVYIKAASKDQKMSIREVKAANIGHLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLF KCPSKRCVTNNRNGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRSMTVHFRGELTRRVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTYLEVMSAT HSKKRYEEYEQGGDEEEQIRKLAEDGEIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHVCLMGDPGVAKSQLLKHIINVAPRGVY TTGKGSSGVGLTAAVQRDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDMRRSPAE NINLPPALLSRFDLLWLILDRADMDADLELARHVVYVHQNKKSPALGFAPLEQSVLRAYISAARRLSPYVPKDLEEYIATAYSSIRQEEAKSNAPHSYTT IRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDERKKSGLDAISDIYSILRDEAARADRMDVSYADALNWISRKGYSEAQLKECLEEY AALNVWQIHHRTFDIRFIDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	0	1
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	1.0	0.9867
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	2.0	0.9802
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10018715 [exp]	2.8	0.9722
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	3.0	0.9734
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	3.0	0.9652
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	3.2	0.9704
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	5.3	0.9655
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	5.7	0.9632
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	6.0	0.9677
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	6.3	0.9655

Compare expression of checked genes

Lus10002427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.