Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62390 521 / 0 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G12060 384 / 5e-128 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 378 / 5e-125 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT1G60790 369 / 1e-122 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G20590 367 / 3e-122 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G06080 346 / 2e-114 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 345 / 4e-114 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT5G49340 331 / 1e-108 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT1G48880 302 / 8e-98 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT5G06230 290 / 6e-94 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011932 [exp] 376 / 3e-126 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 369 / 2e-123 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10021066 [exp] 372 / 2e-122 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 365 / 1e-120 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10034041 [exp] 329 / 5e-108 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 328 / 2e-107 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 326 / 8e-107 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10029126 [exp] 325 / 8e-106 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 323 / 1e-105 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G195800 [exp] 544 / 0 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.006G071500 [exp] 387 / 2e-130 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 374 / 1e-124 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.010G043300 [exp] 374 / 2e-124 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 365 / 6e-120 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 365 / 1e-119 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 349 / 1e-114 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G203900 [exp] 338 / 9e-112 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.008G108500 [exp] 335 / 2e-110 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 335 / 5e-110 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10002430 pacid=23179444 polypeptide=Lus10002430 locus=Lus10002430.g ID=Lus10002430.BGIv1.0 annot-version=v1.0 ATGGAGAGGCAGAGGAGTTTCGCCTTCAAATCCACCAGATTCTTGCTCTTTTCTTTCATACTTGCGTCTTCTCCCATCGTCATCCTCCTCGCATTTCTCA CCATCTGTAGATACAGTTCCACCACCCCTTCCGCAATGCACCACCCAAGTCTGGCCTTCAACACTACCCGCCTAGTCTCCCGTTCCAATCCCAAACCCAT GGATACCAACGTTAGCAAAACGCCAAACGTTAGCGAATTCTTTTCCGTTCTCGACGGAGTTGATACTTCAGTTGCAAACTCCGGTCAACTTCAAGAGATG CTGGTCACTGGTAGCAGAGAAAATGTGGAACAAGGAGAAGAAGAAGTGAAGGAAAGCGTGATTTCAGTGGAGGAGGAAACTAGTGCAGCGACTAGTACTG TAAGTAGTGAGATTCAAATTTCAGGTAAGGAAGTCAAACCAGATTCATCCGTGAGCGTTCCGGTAGATTGGAGTTCCAGGAAATGTGACATTACGGAAGG GAATTGGATCTACGATCCAACCTATCCTCTGTACACCAATCGTTCTTGTCGTTTCATAGACGAAGCTTTCGATTGCGCTGGGAATGGAAGGCCTGATAAC ACTTTCATGAAGTGGAGATGGAAACCTCAAGATTGTGAGATTCCAAGGTTCAATGCAACTCGGATGCTGGAACTAATCAGAGGGAAAAGGTTGGTTTTCG TTGGAGATTCGATAAATAGGAACCAATGGGAATCGATGCTGTGTATGTTAAGTGAAGCAGTGAAAGATCCAAAGAAGGTGTATGAGACTCGTCGAAGGCG GATTACCAAGAAAGGAGGGCCTTACTGCTTCAGATTTGCTGACTACCAATGCACGGTAGAATACTACTTGTCACATTACCTAGTCCATGAGGGCAAAGCC AGGACAGGGAGGAAACGATTCCAGACACTACGGATAGACACCATGGATCGCGGCTCCTCGAAATGGAGAGGAGCTGATATTCTCATCTTCAACTCTGCAC ATTGGTGGTCTCATACCAAAACCAAAGCTGGAACCAACTATTACCAGGAGGGCGACCAAGTTCATCGAAAGCTAGACGTTGGTACGGCCTACACGAGAGC AATAACGACATGGGGATCATGGGTCGATAGACAGATTAATCCGAGGAAAACCCAAGTCTTCTTTAGAAGTTCAGCACCTTCCCATTTCAGGGGAGGCCAG TGGAATTCAGGTGGGCATTGCACGGAAGCCACACTACCTCTTAACCAGACTATGGGTATCAGTGGCGATTACGATAAGGCAAAGGCTACGAAAGAGATCA TCAGGAATATGAGCACCCCAGTGACTTACCTGGACATAACTGCTTTGTCGGCGTTTAGGATAGATGGTCACCCATCTGTTTACGGTAAGAGACCGGAGAA TCGGTATGGAGCCAAGGTTCAAGATTGCAGTCATTGGTGTCTTCCTGGCGTTCCGGATATCTGGAACGAGTTGTTGTATTATCATTTACAATCTAACAAT ACCTACTCATAG
AA sequence Show only first row Show all	>Lus10002430 pacid=23179444 polypeptide=Lus10002430 locus=Lus10002430.g ID=Lus10002430.BGIv1.0 annot-version=v1.0 MERQRSFAFKSTRFLLFSFILASSPIVILLAFLTICRYSSTTPSAMHHPSLAFNTTRLVSRSNPKPMDTNVSKTPNVSEFFSVLDGVDTSVANSGQLQEM LVTGSRENVEQGEEEVKESVISVEEETSAATSTVSSEIQISGKEVKPDSSVSVPVDWSSRKCDITEGNWIYDPTYPLYTNRSCRFIDEAFDCAGNGRPDN TFMKWRWKPQDCEIPRFNATRMLELIRGKRLVFVGDSINRNQWESMLCMLSEAVKDPKKVYETRRRRITKKGGPYCFRFADYQCTVEYYLSHYLVHEGKA RTGRKRFQTLRIDTMDRGSSKWRGADILIFNSAHWWSHTKTKAGTNYYQEGDQVHRKLDVGTAYTRAITTWGSWVDRQINPRKTQVFFRSSAPSHFRGGQ WNSGGHCTEATLPLNQTMGISGDYDKAKATKEIIRNMSTPVTYLDITALSAFRIDGHPSVYGKRPENRYGAKVQDCSHWCLPGVPDIWNELLYYHLQSNN TYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	0	1
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	1.7	0.9205
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	2.0	0.9307
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10008710 [exp]	2.0	0.9253
AT3G53850			Uncharacterised protein family...		Lus10024355 [exp]	2.4	0.9115
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10030377 [exp]	2.8	0.9188
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	3.9	0.8963
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	5.9	0.9148
AT2G21340			MATE efflux family protein (.1...		Lus10017498 [exp]	6.2	0.8923
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10014783 [exp]	6.5	0.8970
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	6.8	0.8909

Compare expression of checked genes

Lus10002430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.