Plant FIBer expression Database

Lus10002431 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02110 184 / 3e-49 transcription coactivators (.1)
AT1G77320 45 / 0.0002 MEI1 meiosis defective 1, transcription coactivators (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001455
[exp]
672 / 0 AT4G02110 372 / 1e-108 transcription coactivators (.1)
Lus10010017
[exp]
284 / 8e-85 AT4G02110 365 / 3e-108 transcription coactivators (.1)
Lus10025038
[exp]
254 / 3e-74 AT4G02110 368 / 1e-109 transcription coactivators (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G122400
[exp]
272 / 1e-79 AT4G02110 382 / 4e-112 transcription coactivators (.1)
Potri.002G197400
[exp]
200 / 7e-55 AT4G02110 374 / 6e-110 transcription coactivators (.1)
Potri.005G182500
[exp]
49 / 1e-05 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2)
PFAM info
Representative CDS sequence
>Lus10002431 pacid=23179443 polypeptide=Lus10002431 locus=Lus10002431.g ID=Lus10002431.BGIv1.0 annot-version=v1.0
ATGAGTCTCTTCTTCTATAGGATAAGTCGGGTTCGATCAAAGCTTCTGAGCGGCGGAGGAGTTGAGAGCCAGAACTATACTCATTTAATCGTCGACAACA
CTGCTTATGATGATCCGGTGTGTGTTTCTGCTAGAAATAATGGGAAGACAGTGGTTACTGGGTTGTGGGTCAACCATAGTTTGTATATCGGATTTGTCGT
TGATCGAACTTCTATAATGTATCAACCTCCAAAAGATATCAATGGAATACCTGGTGCTGATAAACTGTTTGTGTGCTTGACGGGGTACCAGCGCCAAGAT
CAAGAAGACATCATGACAATGGTCAGTCTCATGGGTGCACGATTTTCGAAGCCCTTGATTGCCAACAAAGTCACTCATCTCATATGCTATAAGTTTGAAG
CAAAGGATTCTGAAGAGGATGTGACAGAAACTTCTCTTATGGTATCTACCGGCCATATTGGAAACCTGAGCCTTCGTAATATGGAAAATGGATCTACAAA
GATTGACAACTTGTCAAAACCAATTCCAAAAAGTTCTGCAATGGTGGCTGGAAATTTGTATGTCCACAATGCCAATGAGGTGTTAAGAACTCCTGTCAAT
AAGAAAAGGATGGATATGGGCTGCAGTCCTGATAAGAATCATGCTTCTGATCTAATTGCTGCTCCATCAGAGAGAACTTCGGGTTCGGGGAACGGGGGTG
GTAAGGTGAACTCTGTTTCTAGAAGCGTTGCTAAACCTTCACTTTCTTATACCGATTCGATTGCTGCAAGTCATGGCAGGAAAACTTCACAAATGTCTCC
GTCACTATTCATTGGAGCATCAAAAGCTCCTGGATGCTCTCCAATAGTACAAATAGGAGAACCCATCAATTTCTCTTCTGCTAAAGTTGAAGTTGCAAAC
CAACGCCTTGGTTCTGGTTTCGAGGATTTCAAAAGATTAGTTTCTGAAGAGCTGTCAGATGGTAAAAAGGAAAGGATAGATGCCTTAGAGTCTAGCTCAA
AAAGCCATCAGATGTTTCAGGATAGACAAACTTGGATCATAGGGAGTCCATCACTTAACTATAGAGCTCAAGGGTTGAAATCATCTTCTTTGGAAACTGC
GCCTAGGCTTAACAACAGCTCCCCTGATGGTAGTTATGTTCAGTTTCACTCTGGTAAGGGTATATTAAGTTCGAATGGTGCTTCAAATAGCCATAGCATG
TTAGCATCGAGAGAGCAATCACTAGCAGAAGTTGTCCCATTTGGTGAAAATGCAACATTGGAAAAAATAGGAAAGCAAAGTACTGATATGAAACACCAAG
CCTCAGTGAGTGGATTGAAAGAGTCAAGCTCGCCTACTAAGCAGGACAATGAAGTTCTTTGCTTAGACCAATCTGAAGTTGTGGATCTTAGAAATCAGCT
GGTTAGGGCCTCACCGGTGGGTAAGATAGATATAGCGACTGTGAAGACTTCTGTGGTTACTGCAAATCAGAGGCAGGATAACAGCTTACAAACCAAACAA
GAAGATGTGGCAACTGATCTACGCAGAAGAAATGACAGGACAGATGATGAAGAAAATCTGTTGATGGCCAAAGAGCTTGAAGACCTCCCTGCTAGTGTCG
TTTCAATGGAAGATACGGGAAAGAAACTTGTCATTGATCTAAGGACTGATGTCGAGGATGATATTGACTCTATGAATGATGAAAGAGCGGCAAAGTGA
AA sequence
>Lus10002431 pacid=23179443 polypeptide=Lus10002431 locus=Lus10002431.g ID=Lus10002431.BGIv1.0 annot-version=v1.0
MSLFFYRISRVRSKLLSGGGVESQNYTHLIVDNTAYDDPVCVSARNNGKTVVTGLWVNHSLYIGFVVDRTSIMYQPPKDINGIPGADKLFVCLTGYQRQD
QEDIMTMVSLMGARFSKPLIANKVTHLICYKFEAKDSEEDVTETSLMVSTGHIGNLSLRNMENGSTKIDNLSKPIPKSSAMVAGNLYVHNANEVLRTPVN
KKRMDMGCSPDKNHASDLIAAPSERTSGSGNGGGKVNSVSRSVAKPSLSYTDSIAASHGRKTSQMSPSLFIGASKAPGCSPIVQIGEPINFSSAKVEVAN
QRLGSGFEDFKRLVSEELSDGKKERIDALESSSKSHQMFQDRQTWIIGSPSLNYRAQGLKSSSLETAPRLNNSSPDGSYVQFHSGKGILSSNGASNSHSM
LASREQSLAEVVPFGENATLEKIGKQSTDMKHQASVSGLKESSSPTKQDNEVLCLDQSEVVDLRNQLVRASPVGKIDIATVKTSVVTANQRQDNSLQTKQ
EDVATDLRRRNDRTDDEENLLMAKELEDLPASVVSMEDTGKKLVIDLRTDVEDDIDSMNDERAAK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G02110 transcription coactivators (.1... Lus10002431
[exp]
0 1
AT1G26330 DNA binding (.1.2) Lus10000645
[exp]
7.5 0.9242
AT4G02110 transcription coactivators (.1... Lus10001455
[exp]
8.6 0.9236
AT4G22970 RSW4, AESP RADIALLY SWOLLEN 4, homolog of... Lus10006990
[exp]
11.0 0.9199
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Lus10031111
[exp]
12.7 0.9220
AT5G40820 ATATR, ATRAD3, ... ARABIDOPSIS THALIANA ATAXIA TE... Lus10025091
[exp]
15.5 0.9085
AT5G09840 Putative endonuclease or glyco... Lus10020866
[exp]
17.1 0.9079
AT5G40820 ATATR, ATRAD3, ... ARABIDOPSIS THALIANA ATAXIA TE... Lus10023991
[exp]
20.8 0.9036
AT3G27130 unknown protein Lus10012529
[exp]
26.7 0.8968
AT3G19050 POK2 phragmoplast orienting kinesin... Lus10012048
[exp]
30.2 0.9063
AT2G40030 NRPE1, DMS5, AT... DEFECTIVE IN MERISTEM SILENCIN... Lus10002748
[exp]
31.5 0.8959

Lus10002431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.