Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02110 240 / 6e-72 transcription coactivators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001455 [exp] 457 / 2e-152 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10010017 [exp] 295 / 5e-93 AT4G02110 365 / 3e-108 transcription coactivators (.1) Lus10025038 [exp] 292 / 7e-92 AT4G02110 368 / 1e-109 transcription coactivators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122400 [exp] 314 / 9e-99 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.002G197400 [exp] 290 / 5e-90 AT4G02110 374 / 6e-110 transcription coactivators (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002432 pacid=23179449 polypeptide=Lus10002432 locus=Lus10002432.g ID=Lus10002432.BGIv1.0 annot-version=v1.0 ATGGAAGCAGATAAGGAAAATAAGGCTATCACCCAAGTACATAGAAGTGTGAACATGGCTGAAAAACATGTCGAATCATGTGAGACAAGAATGGACGATA ATCAGGAAGTTCTAGAAACCAAACCCCTTTCTGGAAAACTTGATGATATTTCTACTAATGTGGTGAAGGAGCCAGCGTGCTTTATTGTGAGCGGACATAG ACTGCAGAGGAAGGAGTTTCAGCAGGCAATGCATTTCATTGCTCCGGACCCACTCCGCAGAACAGAAAAGTTATTTGCTGATGCTGCCTCTGGAAGGTGT ACTCTGAAGACTGACTATCTGTCTGCATGCAGTCAGGCAGGGAAGTTTGTTCCTGAGGAGCCTTACGAATATTACAAGAATGGCCTCAGTGAGGATGGTA CTATAAACTTGGAGGCCCCAAGGAAGTGGCGACTACTAAGAGAGCGAACAGGTCATGGAACATTTCATGGTATGCAGATTGTCATCTACGGGGAGTGCAT TTCACCACCGTTGGAAACACTAAAACGTGCAGTGAAGGCTGGAGACGGAACCATACTAGCAACATCCCCTCCTCTCGCGCTTCCTTGCCTCTGGGATCGA CTATGCAATCAGTTCCTAAGGCTGGAGATACCGTGTGTAGTAGCTCATTACTTGGTGGAGTACGTATGCAAGTCGGGGTATTCTTTGGAGAAACATGTCC TCTTCGGCCCCCAGAAATGGGCAGAGAAGTCGTTTAGCAACCTGATGAGGAAAGTGGAGGAGATAGTGGTGGAAAAGGGTGCAGCTTCACCTTCAGCTTC AGAGAGCTCCCAGGAAGATGTGGCTTGCCAGGTAGCGGGAGTAGGGATAGAGGTGAAGTAA
AA sequence Show only first row Show all	>Lus10002432 pacid=23179449 polypeptide=Lus10002432 locus=Lus10002432.g ID=Lus10002432.BGIv1.0 annot-version=v1.0 MEADKENKAITQVHRSVNMAEKHVESCETRMDDNQEVLETKPLSGKLDDISTNVVKEPACFIVSGHRLQRKEFQQAMHFIAPDPLRRTEKLFADAASGRC TLKTDYLSACSQAGKFVPEEPYEYYKNGLSEDGTINLEAPRKWRLLRERTGHGTFHGMQIVIYGECISPPLETLKRAVKAGDGTILATSPPLALPCLWDR LCNQFLRLEIPCVVAHYLVEYVCKSGYSLEKHVLFGPQKWAEKSFSNLMRKVEEIVVEKGAASPSASESSQEDVACQVAGVGIEVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02110			transcription coactivators (.1...		Lus10002432 [exp]	0	1
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10015030 [exp]	10.2	0.7725
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10018436 [exp]	25.8	0.7788
AT3G01410			Polynucleotidyl transferase, r...		Lus10032166 [exp]	34.7	0.6876
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	37.2	0.7568
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	50.8	0.7675
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10040404 [exp]	59.2	0.7605
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	60.2	0.7376
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034434 [exp]	62.3	0.7603
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10042893 [exp]	65.9	0.7574
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10019644 [exp]	94.9	0.7443

Compare expression of checked genes

Lus10002432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.