Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25920 219 / 7e-71 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001457 [exp] 482 / 2e-174 AT2G25920 227 / 7e-74 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198400 [exp] 261 / 3e-87 AT2G25920 238 / 3e-78 unknown protein Potri.014G122900 [exp] 254 / 9e-85 AT2G25920 238 / 3e-78 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002434 pacid=23179446 polypeptide=Lus10002434 locus=Lus10002434.g ID=Lus10002434.BGIv1.0 annot-version=v1.0 ATGGGGTCGGATCCGAATCCGGCAGCGTCTCCGTCTTCATCACCGTCGCGGTCTTCCAATGGGAAGCGACCACGAGACTGTGAAGACGAGGTCTATCTTG ACAATCTACACAATTCCAAGCGTTACCTGAGCGAGATGATGGCATCTAGCCTGAATGGATTGACAGTAGGGGACTCGCTTCCTGATAATCTTATGGACTC TCCGGCAAGGTCTGATAGCTTTTATTACTTCAGGGATGAAACGCCATTGCAGCAGTATTCACCAATGTCAGAAGACTCGGATGACTCCAGATTCTGCGAG ACTCCTCCGGGAACTACCTGCTCATCATCCCAGCCCGAAAGTGTTCCCACTAGCCCGGTATCTCCATACCGTTACCAAAGACCACTCAGCGGGTTCTCAT GCGCAGGTTCATCATCCATCGCTCATTCATTACACAGCTGTGTGGCAAGCACCCAGTCGCGCCAACCTCGGGGTTCATCAGATTCAGAGGGTCGGTTCCC ATCATCTCCAAGTGACATTTGTCACTCAGCCGACTTGAGGAGGGCTGCACTGCTGCGGTCTGTGCAGATGAGAACACAACCTCCTGGACCATCATTGTCC TATGAATCGACATATGGGGAACAAGAGCTTCCTGCGCCAAATATGGAGACCGAGGAGGACCGCTCATGTTTGTATATGAAGAACATGGTTGATGTTGATG AGGGGGGGTATCAAATCGAGGATTGTTCTCCGATGAGAATGTCGGAACCTGATCTTGATGAAGAAGCTAAATCTTCATGTACTGCGTCAAATGATAAAGT GAAAGCAAAGCAGCCTACAACAAGCTGA
AA sequence Show only first row Show all	>Lus10002434 pacid=23179446 polypeptide=Lus10002434 locus=Lus10002434.g ID=Lus10002434.BGIv1.0 annot-version=v1.0 MGSDPNPAASPSSSPSRSSNGKRPRDCEDEVYLDNLHNSKRYLSEMMASSLNGLTVGDSLPDNLMDSPARSDSFYYFRDETPLQQYSPMSEDSDDSRFCE TPPGTTCSSSQPESVPTSPVSPYRYQRPLSGFSCAGSSSIAHSLHSCVASTQSRQPRGSSDSEGRFPSSPSDICHSADLRRAALLRSVQMRTQPPGPSLS YESTYGEQELPAPNMETEEDRSCLYMKNMVDVDEGGYQIEDCSPMRMSEPDLDEEAKSSCTASNDKVKAKQPTTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25920			unknown protein		Lus10002434 [exp]	0	1
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	8.5	0.7586
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	10.5	0.7806
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	15.0	0.7689
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10040413 [exp]	16.0	0.7258
AT1G03070			Bax inhibitor-1 family protein...		Lus10004077 [exp]	16.7	0.7460
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10019007 [exp]	18.1	0.7466
AT5G08060			unknown protein		Lus10034681 [exp]	21.0	0.7460
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10037778 [exp]	26.4	0.7157
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	29.5	0.7485
					Lus10007762 [exp]	29.7	0.6701

Compare expression of checked genes

Lus10002434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.