Plant FIBer expression Database

Lus10002436 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02870 214 / 4e-71 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001459
[exp]
316 / 3e-111 AT1G02870 272 / 3e-94 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G130400
[exp]
225 / 1e-75 AT1G02870 280 / 4e-97 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09420 Nop16 Ribosome biogenesis protein Nop16
Representative CDS sequence
>Lus10002436 pacid=23179436 polypeptide=Lus10002436 locus=Lus10002436.g ID=Lus10002436.BGIv1.0 annot-version=v1.0
ATGGGTGGATCGAGGAGGAGGCTCAAGCGATCTCGGGCGAAGGTGCAAGTTGGACTACCGAGGAAGAACCCTAACATTTTCAAACCGTCGTTCAACCTTC
CTCCAAAGTTCCGGCGCTCCCTGGCCGAAGCCGGCGACGACATCTCAAATTGGGACGATAAGGCCAGCGTCATCCACAACTACAAGACTTTTGGCGTCGT
CTCTAACCCTAATTTGCTCAGCGTCCGCTCTCGTACTTCCCATATCATCGAGAATCAATCTCTCCAAACCCCTCCCCCTGAATCCGACGCCCCCCTTGAC
GAGTTTGAGCCTTTTGACTCCGGCAGCGACCTCGAAGAAGACGATTTGAAATCAGCTCTTGGGAAGCAAAGAAAAGATGGGAAAAGTGCCCCTTTGCTGC
CATTGACCACCATGCAAAGATACCATACCAGTCGGCTGATTGAGAAATATGGAAATGACTACCAGTTGAATTTGAAAATGGTTTTGACAGAGGATGTTTA
TGGACACGAAACTGAACTCAATGCAGCATTCTGTTGCAGCACTGGAGAAATTGTGCAAGAGATATCAAATGTACAAGGATAA
AA sequence
>Lus10002436 pacid=23179436 polypeptide=Lus10002436 locus=Lus10002436.g ID=Lus10002436.BGIv1.0 annot-version=v1.0
MGGSRRRLKRSRAKVQVGLPRKNPNIFKPSFNLPPKFRRSLAEAGDDISNWDDKASVIHNYKTFGVVSNPNLLSVRSRTSHIIENQSLQTPPPESDAPLD
EFEPFDSGSDLEEDDLKSALGKQRKDGKSAPLLPLTTMQRYHTSRLIEKYGNDYQLNLKMVLTEDVYGHETELNAAFCCSTGEIVQEISNVQG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G02870 unknown protein Lus10002436
[exp]
0 1
AT2G25970 KH domain-containing protein (... Lus10020998
[exp]
1.0 0.8925
AT1G02870 unknown protein Lus10001459
[exp]
9.2 0.8338
AT1G63160 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replica... Lus10024504
[exp]
10.7 0.8733
AT3G15970 NUP50 (Nucleoporin 50 kDa) pro... Lus10037931
[exp]
14.4 0.7938
AT4G01560 MEE49 maternal effect embryo arrest ... Lus10007860
[exp]
16.1 0.8333
AT3G53440 Homeodomain-like superfamily p... Lus10039632
[exp]
17.1 0.8489
AT3G57000 nucleolar essential protein-re... Lus10035220
[exp]
18.2 0.8206
AT5G42480 ARC6 ACCUMULATION AND REPLICATION O... Lus10033922
[exp]
18.2 0.8126
AT5G41270 unknown protein Lus10030018
[exp]
18.5 0.8159
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Lus10040316
[exp]
18.6 0.8354

Lus10002436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.