Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26540 243 / 3e-70 Agenet domain-containing protein (.1) AT2G47230 162 / 1e-41 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G11420 147 / 6e-37 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT3G62300 144 / 7e-36 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) AT1G03300 119 / 1e-27 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT2G47220 115 / 3e-27 ATDUF5 DOMAIN OF UNKNOWN FUNCTION 724 5 (.1) AT1G09320 115 / 7e-27 agenet domain-containing protein (.1) AT5G23770 107 / 1e-24 ATDUF8 DOMAIN OF UNKNOWN FUNCTION 724 8 (.1.2) AT5G23800 106 / 6e-24 ATDUF10 ,DUF 10 DOMAIN OF UNKNOWN FUNCTION 724 10 (.1) AT5G23780 89 / 1e-18 ATDUF9 DOMAIN OF UNKNOWN FUNCTION 724 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010060 [exp] 601 / 0 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10004508 [exp] 596 / 0 AT2G47230 167 / 9e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10000430 [exp] 306 / 1e-97 AT3G62300 84 / 3e-17 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10000353 [exp] 145 / 9e-36 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 140 / 6e-35 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10037805 [exp] 120 / 1e-28 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10017088 [exp] 119 / 2e-28 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10027325 [exp] 89 / 2e-20 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10039027 [exp] 77 / 4e-16 AT1G06340 91 / 7e-24 Plant Tudor-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117800 [exp] 262 / 9e-76 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.002G192300 [exp] 248 / 1e-70 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.005G011100 [exp] 137 / 3e-35 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 91 / 2e-19 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G151200 [exp] 81 / 1e-17 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.001G365800 [exp] 63 / 4e-10 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.009G072600 [exp] 60 / 7e-09 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G046800 [exp] 57 / 2e-08 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.006G250600 [exp] 55 / 1e-07 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.002G118600 [exp] 52 / 1e-06 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05266 [flax] [poplar] DUF724 Protein of unknown function (DUF724) CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10002437 pacid=23179433 polypeptide=Lus10002437 locus=Lus10002437.g ID=Lus10002437.BGIv1.0 annot-version=v1.0 ATGGTGATCTCCTCCATCGAAACCGATCTCCAAGCTCACCACCACCATTCCACTCCCCACAACCAACAACAACACATTCCTCTCTTCCAAAAGGGAGAAC CCGTGGAGGTCACCTCCAACGAGGAAGGCTTCGCCGGCTCTTGGTTTCCGGCCACCATCGTCGACTGCTCCGCTCTAAACACCAACTCCACCAACAAGAA GAGGAAGAAGGTTGTCATCCGTTTCGATACTCTCCTCAACGAAGACGGTCGCACTCCCCTGACCGAGTCTGTGGATCCTGCTTTCGTACGGAAATTGCCT CCCGCCGACGGCAAGCATACATTTGAGGTCAACGACGTCGTTGACGTCAGGGACAAGGACGGCTGGTGGGCTGGTGTTGTGGCGAAGGTCCTTGAAGCAG GGAATCGGTACAGAGTTGTATTCGATAACCCACCTGATTCTATCGACTACAATGGGAAGGATCTGAGGTCTCACTGGGACTGGATCTCTGGTGCGTGGAT TCGACCTCACAAACTGCCTTCAAAAGGAGAAGAGGATTTTGTCCCTGGAGAAGACGTAGAAGTGAACCTCCAGAAAGAAACGGTTGGTGATATTTGGCTC CCGGGAGTTGTGATAAAAAGGAGGTCTGATCAAAGTTTCTCGGTCAAGTGTCAGGGGTTGGATAGTTTGGATGATGCAGTAGAAGTAGTAGCAACAAAGG AAGATGTTGTTGTTGTTGATTCGCAGCAAATTCGGCCAACTCCTCCATGCCATTCCCGTACAGACTATGAGTTGATGGATCATGTAGATGGTTTGATTGC TGGAAGCTGGCAGAAGGGATTGATTAATAAAGTTACTGAGGGAAAGTACACAGTCTACCTTCAGCATCGTAAGGAAGAGAGAGAGTTCAGCATCTCCGAA CTTCGGCCTCATTTAGACTGGGATAATGGAGAATGGATAAGCACATTAAGCGTTCAATCCCAGGAACTTAGCGACACTGAAATGCTGGATTCTGGTGATA TTTCTGCTGAAAATCGTCAACTGGCTGTAGTTCCTGTTAGTACTGGTGCTTCCTACGATAATTTCAGCGAGAAAACGCCTTGCTCCTCAACCACAAGAAT CAACATGGACGATTCGAGTATCTATGCTGAAAAGTCTGCTTCAGATGGCTTTACCCCAAGCAATAAGAAGGTGAAAGTAAATTCTGATTTGAGTGGTAAG AAGTTAAGCCATTGCAACACCTTAATGATGGAAGGAGATGCTGGAGAGGCCCCTTTATCTGTCAAAAGCGATAAGGCAACTTCCTCAAAGCTACAAAACG AAAGGTTAACATATGCCAAAAGTTCTCCGGACTGGAACCAGCTTTTTAGCAACACTAAGAAAAGACAAGCAAATCTCTTCGACCGAGATTGCGACATAAA TGCAAAGATGGGTTTTGGAACTATGAGTTCGGAGACCAGCGAGAAGCTGGTTATAACAGCTGTGACTGATGAAGTTGGAGCACAATTAGAACCAGAACTC GAATCTACAGTTCCACGAAATGGAGTGGAGAATAGTGATGATGCGTCCATTGTTGGAGCCACTGAGGGGGTTTCTGCTTTGGTTAGTACAGATTCTGATG CTTGGCCGTTCGTGAAGAAGTCAGCACTTTGGGCACCACTGGAATCGATGGATATATTCAAGAATCTCCCACAAACTCCACACTTCCATCCTCTGAACGA CTGTGAGGAGAAATATCGTGAAGGTGCAGCAATTGGTGTAATGGTATTCTTTGAGAACTTGTTCAAGGAAATTCCCCGTCTTACAATAGACAACCCCAGG AGCTCTTTCGAAAACAGTCTGAAGAGCTTATCTGAAATTGAGGAGCATGGATTCGACGTGTCTGTGCCACGAGGACGGATACACAAGTTGCTATCGATCA GAAATCTGCGCATGGAGTCATTGGCTGAAGTGAAGAACGCTGAAAGAGAGCTGAATGAGCAACTTGAGGAGAAAAGGAAGCTGGAAGCTGTGGTCAAGGA GTTGGAGGACAAGTTAGCTGCAGCAAAAGGAGAGATGGAGGGTAAAAAGGTGAAAACAGCGGTGGCGCAAGCACAAGCGGATAAAATGAAGGGACGGGTT GTTTATGCAAATAGTGAGTTTGAACGGGTATCTAAGAGCCCTTGGAAATGA
AA sequence Show only first row Show all	>Lus10002437 pacid=23179433 polypeptide=Lus10002437 locus=Lus10002437.g ID=Lus10002437.BGIv1.0 annot-version=v1.0 MVISSIETDLQAHHHHSTPHNQQQHIPLFQKGEPVEVTSNEEGFAGSWFPATIVDCSALNTNSTNKKRKKVVIRFDTLLNEDGRTPLTESVDPAFVRKLP PADGKHTFEVNDVVDVRDKDGWWAGVVAKVLEAGNRYRVVFDNPPDSIDYNGKDLRSHWDWISGAWIRPHKLPSKGEEDFVPGEDVEVNLQKETVGDIWL PGVVIKRRSDQSFSVKCQGLDSLDDAVEVVATKEDVVVVDSQQIRPTPPCHSRTDYELMDHVDGLIAGSWQKGLINKVTEGKYTVYLQHRKEEREFSISE LRPHLDWDNGEWISTLSVQSQELSDTEMLDSGDISAENRQLAVVPVSTGASYDNFSEKTPCSSTTRINMDDSSIYAEKSASDGFTPSNKKVKVNSDLSGK KLSHCNTLMMEGDAGEAPLSVKSDKATSSKLQNERLTYAKSSPDWNQLFSNTKKRQANLFDRDCDINAKMGFGTMSSETSEKLVITAVTDEVGAQLEPEL ESTVPRNGVENSDDASIVGATEGVSALVSTDSDAWPFVKKSALWAPLESMDIFKNLPQTPHFHPLNDCEEKYREGAAIGVMVFFENLFKEIPRLTIDNPR SSFENSLKSLSEIEEHGFDVSVPRGRIHKLLSIRNLRMESLAEVKNAERELNEQLEEKRKLEAVVKELEDKLAAAKGEMEGKKVKTAVAQAQADKMKGRV VYANSEFERVSKSPWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10002437 [exp]	0	1
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	5.1	0.9362
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	5.3	0.9368
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	8.7	0.9267
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019275 [exp]	12.0	0.9120
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	16.1	0.8997
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10040282 [exp]	16.2	0.9278
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	17.0	0.9164
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	19.7	0.9097
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	21.0	0.9126
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	21.1	0.9221

Compare expression of checked genes

Lus10002437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.