Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02100 568 / 0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G47440 565 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62570 519 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02650 464 / 1e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12430 92 / 3e-19 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 74 / 1e-13 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT4G30480 50 / 2e-06 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010272 [exp] 653 / 0 AT4G02100 702 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10036335 [exp] 612 / 0 AT4G02100 645 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10019041 [exp] 84 / 1e-16 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10005022 [exp] 82 / 5e-16 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035427 [exp] 80 / 2e-15 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031042 [exp] 56 / 9e-08 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10019560 [exp] 44 / 3e-05 ND 39 / 3e-04 Lus10035117 [exp] 46 / 4e-05 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197300 [exp] 629 / 0 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.014G122300 [exp] 622 / 0 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.006G047700 [exp] 81 / 1e-15 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.016G043900 [exp] 79 / 5e-15 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.009G050200 [exp] 79 / 6e-15 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 79 / 6e-15 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10002438 pacid=23179440 polypeptide=Lus10002438 locus=Lus10002438.g ID=Lus10002438.BGIv1.0 annot-version=v1.0 ATGGCAACATCTCCTTCCCACGGCGGCTGCGGCGCCGGAACCGAGAAGAAGCACTGGTGGCTCACCAATCGCAAGATTGTGGATAAGTACGTTAAGGACG CGAGGAGCTTGATCGCCAGTCAAGATCAGAGCAATGTGGCCTCCGCATTGAATCTACTGGACGCGGCGCTGTCTCTCTCGCCTCGATTCGAACTGGCTCT CGAACTCAAGGCCAGATCCTTGCTCTACCTCCGCCGATTCAAGGACGTAGCCGATTTGCTTCATGACTACATTCCCAGCTTCAAAGATGACTCCGATGAC GACGATTCCTCTTCTTCTTCGTCTTCGTCTTCTTTAGATAGCTCCTCTCAGCAGCTTTCTAGAGAGCGAGCGCAGCTTCTTCCTTCCGATTACAGCCGGG ATCCGATCATCTGCAAGTGTTTCTCCGTCTCCGATTTGAAGAAGAAATTAATGGCGGGTCTATGTAAGAACCGCGACCATCAAGGGCAATGGAGGTATTC AGTATTGGGCCAAGCCTGTTTCCATCTGGGCTTAATGGAGGACGCCATGGTACTTCTCCAAACAGGCAAACGTCTCTCCACCGCCGCATTCCGTCGTCAG AGCATCTCATGGTCTGACGACAGCTTCTCCCTATCCAACTTCACAATCTCCTCCGGGGGAAACGACTCAACTGCCCCACCGCCAACCAATCATCCCCCGC GAACCTCTCCCACGGAAGTGGAAAACATCACGCGTCTCCTCTCCTACATCAAGCTGCTCCTCCACCGCCGCGCTGCTGCCATCGCCGCTCTGGACGCTGG CCTCTACTCCGAGGCGATCCGGCACTTCTCCAAGATCGTCGACGGAAGGCGAGGAGCTCCCCAGGGATTCCTGGCTGATTGTTACATGAACAGAGCTTCC ACCTACAAATCTTGCGGCCGAATCGCGGAAGCTATCGCGGATTGCAACAAGACTCTGGCTCTGGATCCGTCGTCGATTCAAGCGCTGGAGACCAGAGCTT CTCTTCTGGAGACGATCCGGTGCTTCCCTGACAGTCTCCACGATTTAGAGCATCTGAAGCTGCTCTACAACTCGATCCTTCGGGATCGGAAGCTTCCCGG GACGGCGGCTTGGAAGCGGCAGAGCGTTAGGTACAGAGAGATTCCGGGAAGGCTGTGCGCGCTGAGCAACAAAATTCAAACTATGAAACAGAAAGTCAGC GGCGGATGGAGCGGGGACGTGGATTACTATGCGTTGATTGGATTGGGAAAGGGATGCTCCAGATCTGAGCTGACGAGAGCTCATTTGTTGCTGTGCTTGC GGTACAAGCCGGATAAGGCGACGAATTTCGTGGAGCGCTGCGAGATTGCGGACGAAAGGGAGTTGGATTCGGTGAAGGATAGGGCGAGAATGTTCGCGTT GTTGCTTTACCGATTGATTCAGAAAGGTTTCTCGAGCGTTATGGCGAATATTTTGGAAGAGGAGGAAGCGGCAGAGAGTCAGAGAAAGAGAGATGCTGCG GAAATGAGCGGGAACGCGGCGGCGGTGTTCCAGGGGGTGTTCTGCCGTGATCTGACGGTGGTGGGGAGCGTGCTGTCTCAATTTAACCGGCCGATGCCGG TCAGTTACGAGGCGTTGAGCTGCTGA
AA sequence Show only first row Show all	>Lus10002438 pacid=23179440 polypeptide=Lus10002438 locus=Lus10002438.g ID=Lus10002438.BGIv1.0 annot-version=v1.0 MATSPSHGGCGAGTEKKHWWLTNRKIVDKYVKDARSLIASQDQSNVASALNLLDAALSLSPRFELALELKARSLLYLRRFKDVADLLHDYIPSFKDDSDD DDSSSSSSSSSLDSSSQQLSRERAQLLPSDYSRDPIICKCFSVSDLKKKLMAGLCKNRDHQGQWRYSVLGQACFHLGLMEDAMVLLQTGKRLSTAAFRRQ SISWSDDSFSLSNFTISSGGNDSTAPPPTNHPPRTSPTEVENITRLLSYIKLLLHRRAAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLADCYMNRAS TYKSCGRIAEAIADCNKTLALDPSSIQALETRASLLETIRCFPDSLHDLEHLKLLYNSILRDRKLPGTAAWKRQSVRYREIPGRLCALSNKIQTMKQKVS GGWSGDVDYYALIGLGKGCSRSELTRAHLLLCLRYKPDKATNFVERCEIADERELDSVKDRARMFALLLYRLIQKGFSSVMANILEEEEAAESQRKRDAA EMSGNAAAVFQGVFCRDLTVVGSVLSQFNRPMPVSYEALSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02100			Heat shock protein DnaJ with t...		Lus10002438 [exp]	0	1
AT1G48620		HON5	high mobility group A5 (.1)		Lus10032231 [exp]	1.4	0.8381
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030814 [exp]	8.1	0.7886
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	8.5	0.8058
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	10.5	0.8307
AT2G22370			unknown protein		Lus10023150 [exp]	11.7	0.7927
AT1G42430			unknown protein		Lus10021819 [exp]	11.7	0.7638
AT4G10810			unknown protein		Lus10022380 [exp]	13.5	0.7286
AT1G44130			Eukaryotic aspartyl protease f...		Lus10018148 [exp]	14.0	0.8022
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10041810 [exp]	15.5	0.7628
AT1G75060			unknown protein		Lus10017506 [exp]	16.4	0.7925

Compare expression of checked genes

Lus10002438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.