Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62660 593 / 0 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 562 / 0 GATL5 galacturonosyltransferase 5 (.1.2) AT4G02130 553 / 0 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G70090 443 / 5e-155 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 426 / 3e-148 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 417 / 3e-145 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G06260 396 / 5e-137 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 395 / 1e-136 GATL3 galacturonosyltransferase-like 3 (.1) AT3G50760 387 / 1e-133 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 385 / 1e-132 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010025 [exp] 596 / 0 AT3G62660 568 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10001461 [exp] 481 / 4e-171 AT3G62660 374 / 8e-130 galacturonosyltransferase-like 7 (.1) Lus10000262 [exp] 437 / 5e-153 AT3G62660 405 / 2e-141 galacturonosyltransferase-like 7 (.1) Lus10030821 [exp] 432 / 2e-150 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10010727 [exp] 430 / 4e-150 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 428 / 4e-149 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10013296 [exp] 430 / 7e-149 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10012765 [exp] 411 / 1e-142 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034012 [exp] 409 / 3e-142 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200200 [exp] 610 / 0 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G125000 [exp] 599 / 0 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G038300 [exp] 448 / 5e-157 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.010G129400 [exp] 419 / 5e-146 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G116900 [exp] 419 / 6e-146 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G192600 [exp] 416 / 2e-144 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G132900 [exp] 400 / 1e-138 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 400 / 2e-138 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.014G040300 [exp] 400 / 3e-138 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G128000 [exp] 394 / 4e-136 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10002440 pacid=23179450 polypeptide=Lus10002440 locus=Lus10002440.g ID=Lus10002440.BGIv1.0 annot-version=v1.0 ATGGTGACGGCGGCGGCACTGTCTCTCTTCTCCACGACTCTTGCTGACCTCAAAGCAGCCCTAGCATTCCTCCTTCTTCGATCCTCCTTTTTGTCCTTCT CTCCGGCGGATCGGTTCGATTTCAAATCCAAGAAAAAGAAGCGGAGAGGAATTTTCCATCTCAGGAAGAAGATTAAGATGCTCTGGATTATGCGCTTCTC CGGCTTTGTCTCCGCCGCAATGGCTATGATTATCCTCGCCCCTTCCTTACAATCCTTCGCTCCAGCTGAGGCAATCCATTCCTCTCACATTGACCTCCGC TTCCCTGCGGCGGCGGTCCCTCCTGATTCTCAACGGCGCCGTTTCTCCTTCCGTGAGGCCTCCGTGTTCCGCAATGCCGACGAATGTAGCCCCTCTAACC TCCGGAAAAACGGCGTCTGCGATCCTTCCTTGGTCCACGTCGCGATTACGCTCGACGTAGAGTACCTTCGAGGCTCAATCGCTGCGGTCCACTCCATTCT GCAGCACTCAATGTGTCCAGAGAGCGTGTTCTTCCATTTCCTGGTATCGGAAACTAATCTAGAAACCCTAGTCCGCTCCACTTTCCCCAAATTGAAGTTC AAGGTGTATTTCTTCAATCCGGAGATTGTACGGAGCCTAATATCGACTTCCGTGAGGCAGGCGCTCGAGCAGCCGCTCAATTACGCTAGGAATTACCTCG CCGATCTGCTGGAGCCTTGCGTCCGCAGAGTCATTTACCTGGATTCCGATTTAGTCGTCGTCGACGACATTGCCAAGCTGTGGATGACTAGCTTGGGTTC GAAGACGATCGGAGCGCCGGAGTATTGCCACGCCAACTTCAGCAAGTACTTCACGGCGAGGTTCTGGTCGGAGAAGAGGTACTCGGCGACGTTCGACCGC CGGAAGGCGTGCTACTTCAACACCGGGGTGATGGTGATAGATCTGGCGAGATGGAGGAGGTTCCGTTACACGAAGCGAATAGAGCGGTGGATGGAGATAC AGAGGAAGGATAGAATCTATGAGCTGGGGTCGCTGCCGCCGTTTCTTCTGGTCTTCGCCGGGCACGTGGCTCCCATCGACCATCGGTGGAACCAGCACGG ATTAGGAGGTGATAACGTCCGGGGAAGCTGCCGGGACCTTCATCCCGGTGCGGCTAGCCTCCTTCATTGGTCAGGCAGTGGGAAGCCGTGGAGCAGGCTG GATTCGAAGCAGCCGTGCCCGCTGGATGCACTATGGGCGCCATACGATCTATACGGACACTCTCAGTGA
AA sequence Show only first row Show all	>Lus10002440 pacid=23179450 polypeptide=Lus10002440 locus=Lus10002440.g ID=Lus10002440.BGIv1.0 annot-version=v1.0 MVTAAALSLFSTTLADLKAALAFLLLRSSFLSFSPADRFDFKSKKKKRRGIFHLRKKIKMLWIMRFSGFVSAAMAMIILAPSLQSFAPAEAIHSSHIDLR FPAAAVPPDSQRRRFSFREASVFRNADECSPSNLRKNGVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSMCPESVFFHFLVSETNLETLVRSTFPKLKF KVYFFNPEIVRSLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWMTSLGSKTIGAPEYCHANFSKYFTARFWSEKRYSATFDR RKACYFNTGVMVIDLARWRRFRYTKRIERWMEIQRKDRIYELGSLPPFLLVFAGHVAPIDHRWNQHGLGGDNVRGSCRDLHPGAASLLHWSGSGKPWSRL DSKQPCPLDALWAPYDLYGHSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10002440 [exp]	0	1
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10038224 [exp]	1.4	0.9437
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	4.2	0.9400
AT1G24330			ARM repeat superfamily protein...		Lus10015801 [exp]	6.0	0.9084
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10038350 [exp]	6.5	0.9194
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10006076 [exp]	7.2	0.9128
AT5G03080			Phosphatidic acid phosphatase ...		Lus10026489 [exp]	8.5	0.9115
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	10.2	0.9113
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10024669 [exp]	12.2	0.8941
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	15.1	0.8994
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	15.9	0.9095

Compare expression of checked genes

Lus10002440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.