Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04950 597 / 0 EMB2781, ATTAF6, TAF6, TAFII59 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) AT1G54360 543 / 0 TAF6b4, TAF6b3, TAF6b2, TAF6b1 TBP-associated factor 6B4, TBP-ASSOCIATED FACTOR 6B2, TBP-ASSOCIATED FACTOR 6B1, TBP-ASSOCIATED FACTOR 6B (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016578 [exp] 1021 / 0 AT1G04950 617 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Lus10014628 [exp] 628 / 0 AT1G04950 677 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Lus10033805 [exp] 607 / 0 AT1G04950 686 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359400 [exp] 726 / 0 AT1G04950 526 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Potri.014G161100 [exp] 655 / 0 AT1G04950 639 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF02969 [flax] [poplar] TAF TATA box binding protein associated factor (TAF) CL0020 [flax] [poplar] TPR PF07571 [flax] [poplar] TAF6_C TAF6 C-terminal HEAT repeat domain
Representative CDS sequence Show only first row Show all	>Lus10002443 pacid=23161685 polypeptide=Lus10002443 locus=Lus10002443.g ID=Lus10002443.BGIv1.0 annot-version=v1.0 ATGAGCACAGTGGCAGCAGTTCCAAAGGAAGCGATCGAGGTGATTGCACAGAACGTAGGCATCTCCAACCTATCCCCTGCGGTTCCCCTCGCTCTTGCTC CTGATGTCGAATACCGCCTTCGCGAAATTATGCAGGAATCAATAAAGTGCATGCGCCACGCAAGGAGAACGACTTTGACTTCCCAAGATGTTGACAGTGC TCTTGCCTTGAGAAATATTGAGCCTGTTTATGGATTTACTTCCAAGGACTCACAGCGCTTCAAGAGAGTTGCTGGACATAAGGATCTCTATTACGTTGAT GATAAGGCTTTAGAGTTCAAAGATGTCCTGGAAGCTCCTTTATCTAAGCCTCCTCTTGAAACTTCACTTACTGCTCACTGGCTAGCGATTGAAGGCGTTC AACCCGTGATTCCCGAGAATCCTCCACTTGAAACAATAGCAATGTCTGCTGATGGGAAAAGGTCAGACTTCAAGGACGATGGTCTTCCTGTTGACATTAG ATTGCCTGTGAAGCATGTGCTATCAAGAGAACTTCAGCTTTACTTTGATAAAATCAAGGAGCTTACCATGAGGCCCGACTCAATCATATTTAAGCAAGCT TTGCTGAGCTTGGCAACAGACTCGGGTTTACATTCTCTAGTCCCATATTTCACACACTTCATTGCAGATGAGGTAGCACGGCATTTGAGTAACTTGTCCC TTTTGTTTGCATTGATGCGTGTTGCACGAAGTCTTACCCAGAACTCCCACATTCATATAGAACCTTATCTGCACCAGCTGCTACCATCTATTATTACCTG CTTGGTTGCGAAAAGGTTGGGACACAGATTGACAGACAATCATTGGGAATTAAGGAATTTTACAGCCAATCTCATTGTTTTAATATGCAAAAGATTCGGT CATGTTTACCACAATTTACAACCTCGTATTACAAGGACACTGCTGCATGCATTCTTGGACCCAACTAAGTCATTACCTCAACATTATGGTGCAATACAAG GACTAGCTGCCCTAGGACCCAGTGTGGTTCGTCTACTTATACTACCAAATATAGAGCCATATTTACTAATTGTCGAACCTGAAATGCATCTTGAGAAGCA TAAGAATGAGATGAAGAGATATGAAGCTTGGCGGGTCTATGGGGCGTTGATGCATGCAGCTGGTTTGTGTTTGCATGATCGGCTCAAAACCTTACCCAGT TTACTGACACCACCAACTCGTTCGATGTTGAAGAGCAATGGGAAGATGGTGACATCAATGTCAAATAAACGCAAGGCAAGCTCTGACAACTTGATGCAGC AATCACCGCTGAAGAAAATGACAACAGAAGGTGCAATGGGAATGGCATCGATGCAAGGTGGGAGATTCCCTCCAGGGGTAGGTGGTGTATCATCATCTCA AACAATTTCTCGAGGTGAAAACACGGTAGGAGGACGAGCAGGAAGAGAAGAAGCTGGTGGCTTGAAAACATCCATGGTGCTTGCCCAGGCTTGGAAGGAA GATATGGGTGCTGGGAATTTGCTAGCTTCACTCTTTGAGCTCTTTGGTGAAAGGATGTTTTCTTTCACTCCAAAGCCAGAATTGTCCTTTTTCCTGTGA
AA sequence Show only first row Show all	>Lus10002443 pacid=23161685 polypeptide=Lus10002443 locus=Lus10002443.g ID=Lus10002443.BGIv1.0 annot-version=v1.0 MSTVAAVPKEAIEVIAQNVGISNLSPAVPLALAPDVEYRLREIMQESIKCMRHARRTTLTSQDVDSALALRNIEPVYGFTSKDSQRFKRVAGHKDLYYVD DKALEFKDVLEAPLSKPPLETSLTAHWLAIEGVQPVIPENPPLETIAMSADGKRSDFKDDGLPVDIRLPVKHVLSRELQLYFDKIKELTMRPDSIIFKQA LLSLATDSGLHSLVPYFTHFIADEVARHLSNLSLLFALMRVARSLTQNSHIHIEPYLHQLLPSIITCLVAKRLGHRLTDNHWELRNFTANLIVLICKRFG HVYHNLQPRITRTLLHAFLDPTKSLPQHYGAIQGLAALGPSVVRLLILPNIEPYLLIVEPEMHLEKHKNEMKRYEAWRVYGALMHAAGLCLHDRLKTLPS LLTPPTRSMLKSNGKMVTSMSNKRKASSDNLMQQSPLKKMTTEGAMGMASMQGGRFPPGVGGVSSSQTISRGENTVGGRAGREEAGGLKTSMVLAQAWKE DMGAGNLLASLFELFGERMFSFTPKPELSFFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	0	1
AT3G24090			glutamine-fructose-6-phosphate...		Lus10020198 [exp]	1.7	0.9360
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	2.2	0.9464
AT4G11670			Protein of unknown function (D...		Lus10006312 [exp]	4.6	0.9168
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	7.3	0.9438
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10009718 [exp]	7.3	0.9301
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	8.4	0.9258
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10004462 [exp]	9.4	0.8966
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026485 [exp]	10.2	0.9201
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	11.8	0.9231
AT5G66810			unknown protein		Lus10016766 [exp]	13.8	0.9094

Compare expression of checked genes

Lus10002443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.