Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16240 264 / 7e-90 ATSYP51, SYP51 syntaxin of plants 51 (.1.2.3) AT1G79590 258 / 1e-87 ATSYP52, SYP52 syntaxin of plants 52 (.1.2) AT1G16230 162 / 2e-50 Target SNARE coiled-coil domain protein (.1) AT1G16225 117 / 1e-32 Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016577 [exp] 340 / 7e-120 AT1G79590 319 / 1e-111 syntaxin of plants 52 (.1.2) Lus10014759 [exp] 41 / 0.0004 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G030100 [exp] 240 / 1e-80 AT1G79590 265 / 3e-90 syntaxin of plants 52 (.1.2) Potri.006G032900 [exp] 233 / 1e-77 AT1G79590 249 / 1e-83 syntaxin of plants 52 (.1.2) Potri.006G032800 [exp] 229 / 3e-76 AT1G79590 238 / 2e-79 syntaxin of plants 52 (.1.2) Potri.016G030200 [exp] 224 / 4e-74 AT1G79590 246 / 9e-83 syntaxin of plants 52 (.1.2) Potri.011G059700 [exp] 40 / 0.0004 AT1G28490 310 / 2e-107 syntaxin of plants 61 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10002446 pacid=23161684 polypeptide=Lus10002446 locus=Lus10002446.g ID=Lus10002446.BGIv1.0 annot-version=v1.0 ATGGCATCTTCCTCCGACGCTTGGATGAAGGAGTACAATGAAGCAGCAAAGCTTTCTGATGATATTACTGCAATGATATCCGAAAGGACTTCTCTGCCTT CAACTGGACCTGAGAGTCAACGCCATGCTTCTGCTACCCGGAGGAAGATCACCATATTGGGGACCAGACTTGATAGTTTGCAGTCCCTTTTGACAAAGCT TCCCGGGAAGCAGCAAATATCAGAGAAAGAAATGAACCGCCGAAGGGATATGATTGGGAACTTAAGAACAAAAGCCAACCAGATGGCTTCCACGTTGAAC ATGTCAAATTTTGCTAACAGGGATAGTTTGTTAGGCCCTGAAATAAAGCAAGCTGATATTATGAATCGGACAACTGAGCAAGATGAGGGCCTTGAGAAGC TAGAGGAGACAGTGATAAGTACAAAACATATTGCGTTGGCAGTCAATGAGGAACTGGATCTTCACACCAGTCTTATTGATGACTTGGATCTGCATGTGGA CGTAACAGACTCCCGTTTACGGAGTGCAGAAGGAATTAGGAGTATTGAACAAGAGGACCAAGGGAGGTTGCAGCTACATGTGCATGCTTCTGGCGGTGAT TGGGATAGTGGCCCTGGTTGTGGTCATATATATGCTCATCAAGTATTTATGAAGGAAGCACGGTAA
AA sequence Show only first row Show all	>Lus10002446 pacid=23161684 polypeptide=Lus10002446 locus=Lus10002446.g ID=Lus10002446.BGIv1.0 annot-version=v1.0 MASSSDAWMKEYNEAAKLSDDITAMISERTSLPSTGPESQRHASATRRKITILGTRLDSLQSLLTKLPGKQQISEKEMNRRRDMIGNLRTKANQMASTLN MSNFANRDSLLGPEIKQADIMNRTTEQDEGLEKLEETVISTKHIALAVNEELDLHTSLIDDLDLHVDVTDSRLRSAEGIRSIEQEDQGRLQLHVHASGGD WDSGPGCGHIYAHQVFMKEAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	0	1
AT2G07180			Protein kinase superfamily pro...		Lus10040588 [exp]	3.7	0.7974
AT4G01897			unknown protein		Lus10038061 [exp]	7.1	0.7997
AT5G10290			leucine-rich repeat transmembr...		Lus10023146 [exp]	7.7	0.7912
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	10.0	0.8288
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	10.1	0.8290
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	10.5	0.8265
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10015756 [exp]	12.2	0.8166
AT3G42050			vacuolar ATP synthase subunit ...		Lus10020335 [exp]	12.8	0.7742
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10021742 [exp]	14.0	0.7980
AT3G10330			Cyclin-like family protein (.1...		Lus10031055 [exp]	14.9	0.7643

Compare expression of checked genes

Lus10002446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.