Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22380 71 / 8e-13 TIC time for coffee (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010535 [exp] 370 / 3e-115 AT3G22380 766 / 0.0 time for coffee (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089700 [exp] 184 / 1e-50 AT3G22380 657 / 0.0 time for coffee (.1.2) Potri.008G151200 [exp] 169 / 7e-46 AT3G22380 639 / 0.0 time for coffee (.1.2) Potri.005G210200 [exp] 52 / 9e-07 AT3G22380 290 / 6e-80 time for coffee (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002447 pacid=23168985 polypeptide=Lus10002447 locus=Lus10002447.g ID=Lus10002447.BGIv1.0 annot-version=v1.0 ATGTCTGGTTTTCCTCAGAATTTCCAGAGTAGTTCTAACCCTGCGCAGAGCCCTCAGTGGAAAAACTCTGTGAAGCCGGCCAACTCCCAAGTTCCTCCCT CGTCAGTTAACTCAACTTCAGCATCTCTTAAGCCACTTCAACAGCAGCAGAACCGAGGCCAACCAGGTCATACACAAATATCATTTGCAGCAAATCCAAA GCAGTCGGGGACACCACAGGGCCAAGCACCTCCCAGTGGCAATCAATCTCCATCTCCCTCGATGGGGGTTGGTTCTCCTACGACGTCGTCGGTATCAAAG AGTGCTGGTGGAAGTCCAAGGACGACTTCAACTTCAAATAACAGTAACAAAGGTGGGCAATCTTCGGTACTAACTTCCCAGCAGGGGAAGAATTCTCCGT CTGTCGGTATGCAAAAGTCATCTTCTGGTGGAGGGAATATCCCATCAATTCTTGGTCATCCGCACAATACTCAGACCCCTAATAATGGCTCGAAGAACCA ACTTCAGCAACAGCAACAACAACATATGCCAAAGCATGCGTTGCAAGCTCAGATGCTGTATGCTAGTGCATACATGCAGGCACAGCAAGCTCAACATGCT ACAAACAATAATAGCAATGCTGGCTCTGCTCCGAATGGGTTCTATCTCCAGAGACATCGAGGGGAACAGCAGCAGCAGCAGCAGCAGAGCTCAACCCCTC CATCATCAACTGGTATGCTGTCTTTGTGTCCACCAGTGAGTCTGTCGAATTCCCAGACGGCGGATCCTGCAAAGGCAGCTGCTGGTAACAACATGAAGAG TGGAGGGGTTTTACCAATGCAAGGGCAGTTTGGTGGGCAGTCATCAGGGAAGGGGGGGCACCATCAGCTAGTAGCAGGTGGAGGGTTCTCGTACTTGCAT GCGGTTCCTGCTGCAGTTCAGGTGAAACCGGCAGAACAGAAACAACATTCTGTTCAGCAGGTGAAACCTGGAGAACAAAAACAGCCTGCTGCTGGAAGAA GGGAAATGAGAGAGGATTGCAAGACCGGTGGTAGTTCATTTCTTCTGGGAAGGGAAGAAGATGCATGCAGGAGACATGTCAAGCTAGCCTGGCTTTGCGA AAGTGGCCTGAATAAAGAAAAGGAAAGAAAGAAAAGGGGAGAAAGAAAGCAGAGCTTGGGAGAGGATTTCCAGGATGTAAAAAAGATAGAAGAAGAGAAG TCAGCAGCAGCAGCCCAGTCAGTGGTTGGTTTGTAA
AA sequence Show only first row Show all	>Lus10002447 pacid=23168985 polypeptide=Lus10002447 locus=Lus10002447.g ID=Lus10002447.BGIv1.0 annot-version=v1.0 MSGFPQNFQSSSNPAQSPQWKNSVKPANSQVPPSSVNSTSASLKPLQQQQNRGQPGHTQISFAANPKQSGTPQGQAPPSGNQSPSPSMGVGSPTTSSVSK SAGGSPRTTSTSNNSNKGGQSSVLTSQQGKNSPSVGMQKSSSGGGNIPSILGHPHNTQTPNNGSKNQLQQQQQQHMPKHALQAQMLYASAYMQAQQAQHA TNNNSNAGSAPNGFYLQRHRGEQQQQQQQSSTPPSSTGMLSLCPPVSLSNSQTADPAKAAAGNNMKSGGVLPMQGQFGGQSSGKGGHHQLVAGGGFSYLH AVPAAVQVKPAEQKQHSVQQVKPGEQKQPAAGRREMREDCKTGGSSFLLGREEDACRRHVKLAWLCESGLNKEKERKKRGERKQSLGEDFQDVKKIEEEK SAAAAQSVVGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22380		TIC	time for coffee (.1.2)		Lus10002447 [exp]	0	1
AT4G05400			copper ion binding (.1.2)		Lus10035454 [exp]	6.0	0.7555
AT3G57120			Protein kinase superfamily pro...		Lus10038716 [exp]	6.5	0.7551
AT3G10300			Calcium-binding EF-hand family...		Lus10031049 [exp]	7.9	0.7654
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	8.9	0.7498
AT1G73760			RING/U-box superfamily protein...		Lus10007967 [exp]	17.0	0.6984
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	17.9	0.7221
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Lus10042863 [exp]	19.9	0.6858
AT4G16530			Family of unknown function (DU...		Lus10000730 [exp]	20.4	0.7479
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	20.9	0.7357
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	23.2	0.6631

Compare expression of checked genes

Lus10002447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.