Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22380 380 / 2e-113 TIC time for coffee (.1.2) AT3G63180 74 / 3e-13 ATTKL TICKLE, TIC-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010535 [exp] 1259 / 0 AT3G22380 766 / 0.0 time for coffee (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089700 [exp] 618 / 0 AT3G22380 657 / 0.0 time for coffee (.1.2) Potri.008G151200 [exp] 610 / 0 AT3G22380 639 / 0.0 time for coffee (.1.2) Potri.005G210200 [exp] 238 / 3e-65 AT3G22380 290 / 6e-80 time for coffee (.1.2) Potri.002G052300 [exp] 224 / 1e-60 AT3G22380 219 / 2e-57 time for coffee (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002448 pacid=23168986 polypeptide=Lus10002448 locus=Lus10002448.g ID=Lus10002448.BGIv1.0 annot-version=v1.0 ATGGACAGGAATAGAGAGCCTAGAAGAGTGGCCAGGGCCGTGACCAACGGATTGAATAGACGACGACACAGAAGTGGCAACCTCAGAGACTCCCCAGAGG ACGATGGGCCTGTGGAGTTGGCGGAGACCGTGAGACTGCGAGATCGAGGGATTGGTAAAAAAGATCGGGATCGAGACAGAGAACGAGAGCGGGACAGAGA ACGGGAAAGGGAACGAGATCGTGAGCGGGACAGAGAGCGTGATAGGGATCGGATGAGCAGCCATAGCAAGAGGCGGCGAGGCGACCGTTTGATACACGGC ACCATCAGAGAAGACGGTGCTGATGATAGTACAGATGAAAGCATCAACGACGACGAGGATGACGATGACGACGATGGTGGTGGAGGCGTGGCCAGCTCCC TGAGGATGTTACCTCCGAATCCTTCATCTCTTTCTTCTTCTTCCACTTTTTCAAATCACCACCATCGGAAGAGCTTTCCGCCGCCGGCCAAAGTTTTTAG AGCCTCTCCGGTCGTAACAGCCACCCCGTGGAAGGCTCCCGACGAGATGATTGGCGTGTCGGTGCCCAGGAAAGCTCGGTCAGCTTGCACGAAGAGGTCT CTTGATCCTTGGGCTTCAAGTGGCGGAGTTGGCGCGGAACAGATTAATCGGCAGACTTCCCAATCTCCGGTGAGATCCGGCGGACCAGGGAGTTTAGCTT CAGCGTCCCCTTCCCCTGCACCCCTTTCACCTTCTTCTTCTAACGCTTCAGCTAAGAAAAAAATGAAGGCTAACGGGCCGAAGCAGAGACCCCCGAAATC ATCCTCAAAATCTACTTCCTCAGCTCAAGACGAGATCGAGATTGAGATAGCGGAAGTGCTATACGGACTGTTGAGGCAGCCGCAAGGACCTTCCAAGCAA GAAATCCATTCTACAGATTTGAAAGAAGTAAACAAGTTCAGCTCAGATGCGAAATCCAGAGTCTCGTCACCCATCTCCAACTCACCATCTGCTGTTCCCC AATCTTATTCTGCTCCGCCACCGGCTAATTCTACCTCTTCTGTTACGCCCTTGTCTGCAATTGCTCCTAAGCGGAAGAAACCCAGGCCGGTGAAGTACGA AGATGAAAGCCCGTCAATGTTTGCTGTTTGCGGCACCCTCCCTAAGCCACACAAAGTTGGCTCTGATGAATCTACGAAGATGGAGGCATCGACTTCCATG GCCGATACGACTCACTTAGCCGTAGCGGAAAACGGTGTTGTAGCATGCGATTCATCGGTCAACCAGGCAACGACGACTGCCCTACCAAATCAATTTCAGG AGACGGCAAGACCTGTTAATAACAGCACTTTGTCTGATGCGAAGCCGTTGACTGGCGATTCAGAGGTTAGAGATTTGGGATTCACCAAAGAGGAGCCACA ATCGCCGAGGAAGGAATCTACTTCATCTGGTCTCCGATTGGATAAAGATGGCGAGAATTCGGTGCCCGTGAAACCTAATTCAGCAGTTGCGGAGTGTGGA AATCCGCATGAAGAGAAGTTCCAGATAGATCTGATGGCTCCTCCTCCGTCAAGATCATCTCCTGAAAGCGACAGTGAGCTTAATTCTGTGGCCGTAGATC CTAAACCTATGGTTACAGATGTGGAAACGGAAACGAAGCCTGCGGTCAAAGAAGTCGACAAGGCGGTGAAACTTGTTGATGAGGAAGTAAATGCAGGAGG TCCAGACGCAAAAAGGGCAAAAGTTACTGCAGCTGGCGGTGGAGGAGAAGGTTCCCAGAAACAAGAAAGAGATAGTAGTAAAGAGAGGAATATTGATCTC CAGCTTGATTTGGAGAGGACAGAGAGGGATAATGGCAACTCTTCCTTCATTGGAAGCAAGTTGCATATACATCCCCAGAAGCCGCAGCAGCAGCAGCAGC CACAACCTAACCCAGATAAAGCTACCCAATCGCCGGCTCTTCCTTTGCCAATGTCTATGGCCAGCTGGCCTGGTGGGCTTCCACACATGGGATACATGGC ACCTTTACAAGGTGTTGTATCCATGGATGGAAACCCCGTGGCTTCTACCCCTATTCAGCCTCCGCACCTACTTTATGGCCATAATCCACCACCAACTCGG CCAAAGAGGTGTGCAACACATTGCTACATTGCACGTACAATTCAGTATCATCAGCAATGTACGAGGTTGACGTCGTTCTGGCCTGCTGCTGCTGGATCTA CTTTGCAATATGGAGCTAAGGCCGTACCGTCACCAGATCTACATGTTGGGAGGGGGTTGAATTCTGTGCAAGACAAAGGGCAGGGGGTAGCAGTCTTTCC TGGTCACGCTGGGAAGGAGAAGGGCTCTCAAGGTCCTACTGTTGTGGATACTGCACAGAGAAAGCAACAAATTATGATTCAGCAGACATTACCCCCAGGA GCGCCTAGCAATATCCTGCATGGCCCCGCGTTCATCTTTCCTCTGGGTCAGCAGCAGCCTGGATCTGCTCCAGTTTCTGTGCGTCCAGGCCCTGGCAATG TCAAGTCTGCTACAGCACCTGGTTCTGCATCTACATCGAGTTCTGCAGCTACTCCTTCAGTTTCTACTGCTGCCATGGCAATGGCGGGAGCAACAGCTAT GAGTTTTAATTATCCTAATATGCCTGGCAATGAGACCCAGTACTTGGCTATTCTTCAGAATAGTTGA
AA sequence Show only first row Show all	>Lus10002448 pacid=23168986 polypeptide=Lus10002448 locus=Lus10002448.g ID=Lus10002448.BGIv1.0 annot-version=v1.0 MDRNREPRRVARAVTNGLNRRRHRSGNLRDSPEDDGPVELAETVRLRDRGIGKKDRDRDRERERDRERERERDRERDRERDRDRMSSHSKRRRGDRLIHG TIREDGADDSTDESINDDEDDDDDDGGGGVASSLRMLPPNPSSLSSSSTFSNHHHRKSFPPPAKVFRASPVVTATPWKAPDEMIGVSVPRKARSACTKRS LDPWASSGGVGAEQINRQTSQSPVRSGGPGSLASASPSPAPLSPSSSNASAKKKMKANGPKQRPPKSSSKSTSSAQDEIEIEIAEVLYGLLRQPQGPSKQ EIHSTDLKEVNKFSSDAKSRVSSPISNSPSAVPQSYSAPPPANSTSSVTPLSAIAPKRKKPRPVKYEDESPSMFAVCGTLPKPHKVGSDESTKMEASTSM ADTTHLAVAENGVVACDSSVNQATTTALPNQFQETARPVNNSTLSDAKPLTGDSEVRDLGFTKEEPQSPRKESTSSGLRLDKDGENSVPVKPNSAVAECG NPHEEKFQIDLMAPPPSRSSPESDSELNSVAVDPKPMVTDVETETKPAVKEVDKAVKLVDEEVNAGGPDAKRAKVTAAGGGGEGSQKQERDSSKERNIDL QLDLERTERDNGNSSFIGSKLHIHPQKPQQQQQPQPNPDKATQSPALPLPMSMASWPGGLPHMGYMAPLQGVVSMDGNPVASTPIQPPHLLYGHNPPPTR PKRCATHCYIARTIQYHQQCTRLTSFWPAAAGSTLQYGAKAVPSPDLHVGRGLNSVQDKGQGVAVFPGHAGKEKGSQGPTVVDTAQRKQQIMIQQTLPPG APSNILHGPAFIFPLGQQQPGSAPVSVRPGPGNVKSATAPGSASTSSSAATPSVSTAAMAMAGATAMSFNYPNMPGNETQYLAILQNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22380		TIC	time for coffee (.1.2)		Lus10002448 [exp]	0	1
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10005068 [exp]	2.2	0.9486
AT3G61690			nucleotidyltransferases (.1)		Lus10004018 [exp]	3.7	0.9471
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10014764 [exp]	5.9	0.9419
AT5G01730		ATSCAR4, WAVE3	SCAR family protein 4 (.1)		Lus10029437 [exp]	7.2	0.9380
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	8.3	0.9454
AT1G58230			binding (.1)		Lus10028167 [exp]	9.7	0.9445
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	11.5	0.9032
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10027841 [exp]	12.0	0.9417
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	12.5	0.9449
AT4G30100			P-loop containing nucleoside t...		Lus10020914 [exp]	15.6	0.9389

Compare expression of checked genes

Lus10002448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.