Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26340 884 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 631 / 0 STP7 sugar transporter protein 7 (.1) AT1G11260 595 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19940 586 / 0 Major facilitator superfamily protein (.1) AT1G50310 585 / 0 ATSTP9 sugar transporter 9 (.1) AT5G26250 582 / 0 Major facilitator superfamily protein (.1) AT3G05960 581 / 0 ATSTP6 sugar transporter 6 (.1) AT1G77210 579 / 0 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT5G23270 553 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT3G19930 553 / 0 ATSTP4, STP4 sugar transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010534 [exp] 1031 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 832 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 607 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 577 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 561 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10002452 [exp] 561 / 0 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10036325 [exp] 559 / 0 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10005870 [exp] 551 / 0 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10022421 [exp] 550 / 0 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151100 [exp] 854 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 847 / 0 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.018G113300 [exp] 618 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.001G248900 [exp] 617 / 0 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.006G189100 [exp] 604 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.007G072800 [exp] 599 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 595 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.004G101900 [exp] 592 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 592 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G109765 [exp] 592 / 0 AT1G11260 630 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10002450 pacid=23168993 polypeptide=Lus10002450 locus=Lus10002450.g ID=Lus10002450.BGIv1.0 annot-version=v1.0 ATGGCAGGGGGAGGATTCGCTACGGCCGGAGGAACAGAGTTCGAAGCCAAGATTACTCCCATCGTCATCCTCTCATGTATCATGGCCGCCACCGGCGGCC TCATGTTTGGCTATGATGTTGGTGTCTCAGGGGGAGTGACGTCGATGCCGCCGTTCCTGGAGAAGTTTTTCCCGGCGGTACACAGAAAGACACAGGATCC AAATATGGACAACAGCAACTACTGCAAGTATGACAACCAAGGATTGCAGTTGTTCACATCATCGCTCTACCTGGCCGGACTCACGGCTACATTTTTTGCC TCCTACACCACCAGGACCCTCGGGAGGAGGCCCACCATGTTGATCGCTGGAATATTCTTCCTCGCCGGTGTGGGGCTCAACGCCGCCGCTCAGGACCTCG CCATGCTCATCATCGGCAGGATCTTGCTCGGCTGTGGAGTCGGCTTCGCTAATCAGGCCGTGCCGTTGTTTTTATCGGAGATAGCTCCGACAAGAATCCG TGGAGCTTTGAACATATTGTTCCAGCTGAATGTCACAATAGGCATTCTTTTCGCCAACTTGATCAACTATGGCACTGCCAAGATCAAAGGTGGATGGGGA TGGAGACTATCGCTGGGTCTGGCGGGAGTTCCAGCAGTCCTCCTAACCTTGGGAGCACTCATTGTATCAGAGACTCCAAACAGTTTGATAGAACGTGGCC GTTTAGATGAAGGGAAGGCTGTACTTAAGAGGATAAGAGGAACCGATAAGGTGGACCCAGAGTTCCAAGAGCTTGTAGACGCTAGCCGCATTGCTAAGGA AGTCAAACACCCTTTCAGAAACCTCCTCAAGCGCCGCAACCGCCCTCAACTAGTCATTGCCATCGCCTTGCAGATATTCCAACAATGCACGGGAATCAAC GCCATAATGTTCTACGCCCCGGTCCTATTCAACACCTTGGGTTTCAAAAGCGACGCATCCCTCTACTCCGCCGTCATCACCGGAGCAGTCAACGTCCTCT CCACAGTCGTCTCCATCTACTCAGTCGACAAGCTCGGCCGCCGCTTGCTCCTTCTAGAAGCCGGAGTCCAGATGTTCTTCTCCCAGGTAATCATCGCCGT CATCCTCGGAATCAAAGTCACCGACCACTCCGACGAACTCGGAAAGGGGTTCGCCATCCTGGTGGTGATCATGGTCTGCACATTTGTCTCGGTATTCGCA TGGTCGTGGGGCCCGCTGGGATGGCTGATCCCCAGCGAGACTTTCCCGCTGGAGACGAGGTCGGCGGGGCAGAGCGTGACCGTGTGCGTGAACTTGCTGT TCACGTTCGTGATAGCGCAGGCTTTCTTGTCGATGCTCTGCCACTTCAAGTTCGGGATATTCCTCTTCTTCTCCGGGTGGGTGGCGGTGATGTCGGTGTT CGTGCTGTTTTTGGTGCCGGAGACGAAAAATATTCCCATCGAGGAGATGACGGAGAAGGTTTGGAAGCGACATTGGTTCTGGAAGAGGTATATGGAGGAT GATGACGTGGAGCTTGATCATGTGCCGGCGAAGATTGAGGGGAAGAGCGGTGGTAATAGTAATGGGGTCGATCATCCTTCTTCTTAA
AA sequence Show only first row Show all	>Lus10002450 pacid=23168993 polypeptide=Lus10002450 locus=Lus10002450.g ID=Lus10002450.BGIv1.0 annot-version=v1.0 MAGGGFATAGGTEFEAKITPIVILSCIMAATGGLMFGYDVGVSGGVTSMPPFLEKFFPAVHRKTQDPNMDNSNYCKYDNQGLQLFTSSLYLAGLTATFFA SYTTRTLGRRPTMLIAGIFFLAGVGLNAAAQDLAMLIIGRILLGCGVGFANQAVPLFLSEIAPTRIRGALNILFQLNVTIGILFANLINYGTAKIKGGWG WRLSLGLAGVPAVLLTLGALIVSETPNSLIERGRLDEGKAVLKRIRGTDKVDPEFQELVDASRIAKEVKHPFRNLLKRRNRPQLVIAIALQIFQQCTGIN AIMFYAPVLFNTLGFKSDASLYSAVITGAVNVLSTVVSIYSVDKLGRRLLLLEAGVQMFFSQVIIAVILGIKVTDHSDELGKGFAILVVIMVCTFVSVFA WSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVAVMSVFVLFLVPETKNIPIEEMTEKVWKRHWFWKRYMED DDVELDHVPAKIEGKSGGNSNGVDHPSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10002450 [exp]	0	1
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	3.2	0.9942
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	3.5	0.9928
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10015546 [exp]	3.9	0.9927
AT3G48140			B12D protein (.1)		Lus10036977 [exp]	4.4	0.9860
					Lus10041163 [exp]	5.7	0.9922
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041973 [exp]	8.9	0.9917
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021314 [exp]	9.2	0.9908
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	9.5	0.9902
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023280 [exp]	10.4	0.9868
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	10.7	0.9909

Compare expression of checked genes

Lus10002450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.