Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26250 581 / 0 Major facilitator superfamily protein (.1) AT3G05960 576 / 0 ATSTP6 sugar transporter 6 (.1) AT5G26340 511 / 2e-178 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G07340 481 / 8e-167 ATSTP2 sugar transporter 2 (.1) AT1G50310 468 / 1e-161 ATSTP9 sugar transporter 9 (.1) AT3G19940 465 / 2e-160 Major facilitator superfamily protein (.1) AT4G02050 457 / 2e-157 STP7 sugar transporter protein 7 (.1) AT5G23270 436 / 4e-149 ATSTP11, STP11 sugar transporter 11 (.1) AT1G77210 434 / 1e-148 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT4G21480 432 / 8e-148 STP12 sugar transporter protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010532 [exp] 853 / 0 AT5G26250 588 / 0.0 Major facilitator superfamily protein (.1) Lus10021926 [exp] 703 / 0 AT5G26250 656 / 0.0 Major facilitator superfamily protein (.1) Lus10005870 [exp] 523 / 0 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10010534 [exp] 502 / 9e-175 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 501 / 2e-174 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 496 / 4e-172 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 451 / 4e-155 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10036325 [exp] 434 / 3e-148 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10018422 [exp] 429 / 3e-146 AT1G11260 835 / 0.0 sugar transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090000 [exp] 676 / 0 AT5G26250 664 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150800 [exp] 598 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150700 [exp] 598 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248900 [exp] 571 / 0 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042900 [exp] 519 / 0 AT5G26250 577 / 0.0 Major facilitator superfamily protein (.1) Potri.008G151100 [exp] 496 / 1e-172 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 491 / 2e-170 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.018G113300 [exp] 472 / 4e-163 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.006G189100 [exp] 464 / 6e-160 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.005G090700 [exp] 441 / 4e-151 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10002452 pacid=23168988 polypeptide=Lus10002452 locus=Lus10002452.g ID=Lus10002452.BGIv1.0 annot-version=v1.0 ATGGACGTGGAGAAACCTAGACACGAGCATTTCCCGTCGAAGATCACAATCTACGTCGTATTATGCTGGTTCCTGGCCGCTTTCGGTGGGCTCATGTTCG GCTACGACATTGGCATCTCCGGTGGGGTTTCGGCCATGGACGACTTCCTTATAAAGTTCTTCCCCAAAGTATACCAAAAGAAGCTCCACGCCAAGGAAGA CAACTACTGTAAATACGACGACCAGAACCTTCAGCTCTTCACTTCGTCTCTCTATCTCGCTGCTCTGGTTTCCAGCTTTGTGGCGTCCAGGATCTGCGAG AAATTCGGAAGGAAGCCCACCATTCTCGTTGCCTCCGTGTTTTTCCTCGCTGGTGCCGCCCTTAGCGCCCTTGCTGTCAACATCGAAATGCTCATCATCG GCAGAGTCCTCCTCGGTGTTGGCGTTGGCTTCGGTAATGAGGGGGTTCCCCTGTTTTTGTCAGAGATCGCGCCGGTGAAATACAGAGGAGCAGTGAACAT CCTGTTCCAGCTGTTCGTCACGATCGGAATCCTCTTCGCAAACATCGTCAACTACTTCACTTCCACTCACCATCCGTACGGATGGAGGATCTCCCTGGCG ATCGCCGGAGTACCCGCGCTGGGCCTGTTCATCGGCTCGATCGTGATCTCCGAGACACCGACCAGTCTGGTGGAGCGTCAGAAGCTGGAAGAGGGCCACA AGACGCTGAAAGTGATAAGAGGAGTCGACAACGTGGACGCCGAGTTCAACCAAATCAAGATCGCATGCGAGGAGGCCCAGCGCTGCAAGAGTCCCTACAA GGAGCTCCTCACCAACAAGGCCAGCTTCCCTCCTTTGATCATCGGAATCCTGCTCCAGGTTTTCCAGCAATTTACTGGAATCAACGCCATCATGTTCTAC GCTCCTGTTCTTTTCCAGACCGTTGGTTTCAAGAACGACGCCTCTCTGTTGTCCTCCGTCATCACCGGAGTCGTCAACGTCCTCAGTACGATGGTCTCTG TCGTCGCTGTCGACAAGGTCGGCCGTAAGGCCCTTCTCCTTGAGGCCTGCGTTCAGATGTTCATTGCCCAGGTGGTGATAGGGATAATATTGCACTTAAA CCTGTCGGCGACGGGGACGCTGACTAAGGTGGAAGCAGGGGTAGTGGTGGGGCTGGTGTGTTTCTTCGTGATGGGATTCGCATGGTCATGGGGTCCACTG GGTTGGCTTATTCCCAGCGAGACATTCCCAGTGGAGACCAGAGCTGCTGGTTTCGCCTTCGCCGTCAGCTCAAACATGCTCTTCACCTTCATCATAGCTC AGGCTTTCCTCTCCATGATGTGCCATATGCAAGCCTATATCTTCTTCTTCTTCGCAGCGTGGATCCTCCTCATGGGTCTTTTCGTCATCTTCTTCTTGCC CGAGACCAAGGGCGTCCCCATCGACGCCATGGTCGAGCGCGTCTGGAAGAAGCACCATTTCTGGAAGAAGTTCATGGACTGA
AA sequence Show only first row Show all	>Lus10002452 pacid=23168988 polypeptide=Lus10002452 locus=Lus10002452.g ID=Lus10002452.BGIv1.0 annot-version=v1.0 MDVEKPRHEHFPSKITIYVVLCWFLAAFGGLMFGYDIGISGGVSAMDDFLIKFFPKVYQKKLHAKEDNYCKYDDQNLQLFTSSLYLAALVSSFVASRICE KFGRKPTILVASVFFLAGAALSALAVNIEMLIIGRVLLGVGVGFGNEGVPLFLSEIAPVKYRGAVNILFQLFVTIGILFANIVNYFTSTHHPYGWRISLA IAGVPALGLFIGSIVISETPTSLVERQKLEEGHKTLKVIRGVDNVDAEFNQIKIACEEAQRCKSPYKELLTNKASFPPLIIGILLQVFQQFTGINAIMFY APVLFQTVGFKNDASLLSSVITGVVNVLSTMVSVVAVDKVGRKALLLEACVQMFIAQVVIGIILHLNLSATGTLTKVEAGVVVGLVCFFVMGFAWSWGPL GWLIPSETFPVETRAAGFAFAVSSNMLFTFIIAQAFLSMMCHMQAYIFFFFAAWILLMGLFVIFFLPETKGVPIDAMVERVWKKHHFWKKFMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26250			Major facilitator superfamily ...		Lus10002452 [exp]	0	1
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10042104 [exp]	5.8	0.8793
AT1G61500			S-locus lectin protein kinase ...		Lus10024081 [exp]	13.0	0.8432
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	23.5	0.8759
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10015367 [exp]	24.5	0.8477
					Lus10034710 [exp]	41.4	0.8397
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10015133 [exp]	69.2	0.8042
AT2G24700	B3	REM10	Transcriptional factor B3 fami...		Lus10026264 [exp]	77.6	0.8295
AT3G13840	GRAS		GRAS family transcription fact...		Lus10022097 [exp]	78.2	0.8235
AT4G04955		ATALN	allantoinase (.1)		Lus10018186 [exp]	84.1	0.8339
AT3G47350		ATHSD2	hydroxysteroid dehydrogenase 2...		Lus10022442 [exp]	89.0	0.8016

Compare expression of checked genes

Lus10002452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.