Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26240 1180 / 0 ATCLC-D, CLC-D chloride channel D (.1) AT5G49890 541 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT5G33280 513 / 1e-171 Voltage-gated chloride channel family protein (.1) AT3G27170 504 / 6e-168 ATCLC-B, CLC-B chloride channel B (.1) AT5G40890 504 / 1e-167 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010531 [exp] 1407 / 0 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10007433 [exp] 553 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 546 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10038118 [exp] 521 / 1e-172 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10012526 [exp] 501 / 1e-166 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10041567 [exp] 180 / 8e-51 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 85 / 2e-18 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090100 [exp] 1256 / 0 AT5G26240 1149 / 0.0 chloride channel D (.1) Potri.003G001500 [exp] 548 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.004G228300 [exp] 541 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.006G064000 [exp] 538 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.001G331700 [exp] 535 / 1e-179 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.T046200 [exp] 522 / 1e-174 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 515 / 4e-172 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.018G124100 [exp] 511 / 2e-170 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10002453 pacid=23168984 polypeptide=Lus10002453 locus=Lus10002453.g ID=Lus10002453.BGIv1.0 annot-version=v1.0 ATGTTGTCGAATCATTTGCAGAATGGAATTGAGACCGCTAATCAGTTGTGGTCTCGGATACCTAACTCGGAGGATGGAGAACTCGACGGAGGCACGCTAT TGGGCACCAGCGAAGGGGGAAATGTAGAGAGTCTTGATTATGAAGTAGTTGAGAATTATGAGTACCGAGAAGAGCAGGCGCAGAGAGGGAAGCTGTATGT TGGATACTTTGTAGCTGTGAAGTGGTTCTTTGCATTGCTTATTGGAATTGGTACTGGATTAGCAGCTGTTTTCATCAATATATCGGTTGAGAACTTTGCT GGCTGGAAGTTTTCGTTGACGTTTGCAGTAATACAAAAGTCTTATCTTGCAGGCTTTGTACTTTATTTACTAATCAACCTGGTTTTAGTTTTTTCATCTG TATATATCATCACCCATTTCGCACCTGCGGCAGCAGGGTCTGGTATTCCCGAAATCAAGGGTTATTTAAATGGAGTTGATATCCATGGTATCCTTCTCTT CAGAACCTTGGTCGGAAAGATATTTGGCAGCATTGGTTCTGTTGGAGGTGGTCTTGCTTTGGGCAAGGAAGGTCCTCTTGTTCATACTGGTGCTTGCATT GCTTCATTGTTAGGACAGGGTGGTACTACAAAGTATCATTTAAATTCCCGGTGGCTTCATTTTTTCCAAAGTGATCGTGACCGCCGTGATCTGGTAACAT GTGGGTGTGCAGCTGGAGTAGCTGCTGCTTTTAGAGCTCCAGTTGGTGGTGTACTGTTTGCATTGGAAGAAGTCACATCTTGGTGGCGGAGCCAACTTAT GTGGCGTGTCTTTTTCACTTCTGCTATTGTGGCACTTGTGGTTGGTACTGCAATGGGATGGTGTAAGAGTGGAAAGTGTGGGCACTTTGGGTCAGGAGGT TTTATCATATGGGACGTGTCAGATGGTCAAGAGGACTACTCATTTGAGGAGTTATTCCCGATGGCTGTTATCGGAGTGATTGGTGGTCTGCTTGGTGCCT TATTTAACCAGCTTACTATATATATAACTTACTGGCGTCGAAACTATTTACACAAGAAAGGAACCCGTGTTAAGATAATTGAAGCTTGCATCATCTCAGT CATAACTTCAGCTATTTCTTTTGGACTTCCACTCCTAAGAAGGTGCAGTCCGTGTCCAGAATCTGGTACCGACTCTACTATTGAGTGTCCGCGTCCTCCT GGAATGTATGGGAACTATGTCAGTTTCTTCTGTGGCAAGGACAAAGAATACAATGACCTTGCGACAATTTTCTTCAACACTCAGGATGATGCAATCAGGA ATCTCTTTAGTGCAAAGACAATCCATGAGTTCAGTGCTCAAAGTTTATTGACATTTCTGGTTATGTTTTACACATTAGCAGTCGTGACTTTTGGTACAGC TGTTCCAGCTGGTCAGTTTGTTCCTGGAATATTGATAGGGTCAACATATGGACGCCTTGTTGGAATGTTTGTCGTTAATTTTTACAAGAAACTTAACATC GAGGAAGGAACGTATGCTTTACTTGGAGCTGCTTCTTTCCTTGGAGGTTCAATGAGGATGACAGTGTCGTTATGCGTTATCATGGTTGAGATCACGAACA ACTTGAAACTTCTGCCTCTTATAATGCTTGTGCTCCTTATCTCAAAGGCTGTTGGTGATGCTTTTAATGAAGGCCTGTACGAAGAACAGGCAAGATTAAG GGGAATACCATTGCTGGAGGCTAAACCAAAATACCAGATGAGGACAATGAGTGCAAAGGAAGCTTGTGGTAATCAGAAGGTTGTTTCTCTTCCTCGTGTT GCTAAGGTCTCAGATATTGTTTCTATTTTGCGGAGCAATAAGCACAATGGGTTTCCTGTAATTGATCATAAAAGAAATGGAGAAACACTTGTAGTTGGGC TTATGCTTCGCAGCCATTTACTAGTACTACTTCAGTCTAAGGTGGATTTCCAGCATAGTCCTTTGCCCTTTGAAACTCTAGGCCGGTCAAGACCAATCAG GCACAATTTTAACGAGTTTGTAAAACCTGCTTCAACCAAGGGTATTTCTGTTGAGGATATTCATTTGAGTTCAGATGACTTGGAAATGTACATAGATCTA GCACCCTTTTTGAATCCCTCTCCATACGTAGTCCCAGAAGATATGTCTGTAACAAAAGTATATAATCTTTTTCGTCAACTTGGATTGCGGCATATATTTG TTGTCCCTCGGCCTGCAAGAATTATTGGCTTAATCACTAGAAAGGATCTACTGATAGAGGATGGGGAGGATACGGCCAATGTGGAGCTCCAATCAACTAG TGTAAGATCTCGTCGTCATGACCCGGCCGGCTTTGTAAGGACCATGGAAGTAGAGCGGCCACTTCTGAATGGTCTTCTTCCGCCTCAACATCAGCCGTAA
AA sequence Show only first row Show all	>Lus10002453 pacid=23168984 polypeptide=Lus10002453 locus=Lus10002453.g ID=Lus10002453.BGIv1.0 annot-version=v1.0 MLSNHLQNGIETANQLWSRIPNSEDGELDGGTLLGTSEGGNVESLDYEVVENYEYREEQAQRGKLYVGYFVAVKWFFALLIGIGTGLAAVFINISVENFA GWKFSLTFAVIQKSYLAGFVLYLLINLVLVFSSVYIITHFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLVGKIFGSIGSVGGGLALGKEGPLVHTGACI ASLLGQGGTTKYHLNSRWLHFFQSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVALVVGTAMGWCKSGKCGHFGSGG FIIWDVSDGQEDYSFEELFPMAVIGVIGGLLGALFNQLTIYITYWRRNYLHKKGTRVKIIEACIISVITSAISFGLPLLRRCSPCPESGTDSTIECPRPP GMYGNYVSFFCGKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEFSAQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGILIGSTYGRLVGMFVVNFYKKLNI EEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLEAKPKYQMRTMSAKEACGNQKVVSLPRV AKVSDIVSILRSNKHNGFPVIDHKRNGETLVVGLMLRSHLLVLLQSKVDFQHSPLPFETLGRSRPIRHNFNEFVKPASTKGISVEDIHLSSDDLEMYIDL APFLNPSPYVVPEDMSVTKVYNLFRQLGLRHIFVVPRPARIIGLITRKDLLIEDGEDTANVELQSTSVRSRRHDPAGFVRTMEVERPLLNGLLPPQHQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	0	1
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	1.4	0.9703
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	2.0	0.9710
AT1G34540		CYP94D1	"cytochrome P450, family 94, s...		Lus10041637 [exp]	2.8	0.9534
AT2G35450			catalytics;hydrolases (.1)		Lus10015759 [exp]	3.7	0.9513
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	4.9	0.9696
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031774 [exp]	5.3	0.9560
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	6.0	0.9531
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	6.1	0.9411
AT5G58160			actin binding (.1)		Lus10035830 [exp]	7.6	0.9441
AT2G30105			unknown protein		Lus10031291 [exp]	8.5	0.9330

Compare expression of checked genes

Lus10002453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.