Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27600 1071 / 0 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 1066 / 0 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT4G23850 457 / 6e-152 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 452 / 8e-150 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT1G64400 444 / 5e-147 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 444 / 7e-147 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 435 / 2e-143 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 362 / 4e-115 LACS9 long chain acyl-CoA synthetase 9 (.1) AT2G04350 355 / 1e-111 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G23790 175 / 5e-46 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010530 [exp] 1349 / 0 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 1047 / 0 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 1038 / 0 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10021021 [exp] 459 / 9e-153 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032380 [exp] 456 / 2e-150 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10023832 [exp] 447 / 5e-148 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10001830 [exp] 423 / 4e-139 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10032840 [exp] 412 / 2e-134 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10002414 [exp] 382 / 6e-123 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090200 [exp] 1147 / 0 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 1077 / 0 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.003G139700 [exp] 464 / 9e-155 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 461 / 2e-153 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 453 / 2e-150 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 397 / 6e-129 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 351 / 1e-110 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169400 [exp] 350 / 8e-110 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 348 / 2e-109 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 320 / 2e-100 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10002454 pacid=23168987 polypeptide=Lus10002454 locus=Lus10002454.g ID=Lus10002454.BGIv1.0 annot-version=v1.0 ATGGAGGAACCAAAAGGGCTGATGACGACAGCTGCTCAACGTCGCATGAAGACCATTCACGATCACCTCACTGCCTCCTCCGCCGCCCACGAATCCTCGC CGTCGAACCAGCTCTGTCAGAGTCCTACTGCCGGCGAGTTTTTCTCAGAGCAGGGTTACAGTGTAGTGCTTCCTGAGAAACTACAGACTGGGAAGTGGAA TGTGTACAGGTCGGTCCGATCTCCTTTGAAGCTTGTGTCTCGATTCCCTAACAATCCTGAAATCGGCACATTGCATGAAAATTTTGTGCGAGCCGTTGAT GTTTACCGTGACTACAAGTATCTTGGGACGCGGATTCGAGTTGATGGAACAGTTGGAGACTACAAATGGATGACATTTGGAGAAGCAGGCACGGCAAGAA CTTCAATAGGGTCTGGCTTAATGCATCATGGAATAGAGAAGGGTGCTAGTGTTGGATTGTACTTTATCAACAGACCAGAATGGATTATTGTTGATAATGC CTGTGCAGCCTATTCTTATGTATCAGTTCCTTTATATGACACTCTCGGTCCTGATGCTGTGAAGTACATCGTAAATCATGCTATGGTGCAAGCTATATTT TGTGTGCCTCAAACACTGAATTCTTTACTGAGCTTTCTCTCTGAGATTCCATCAGTGCGCGTTATTGTGGTTGTTGGAGGAATTGATGATCAAATACCAT CTCTTCCATCATCAGCTGGAGTTCAGGTTGTAACCTATTCGAAACTGCTCAGCCAGGGCCGCAGTAATCTCCATCCGTTTTGCCCACCAAAACCAGAAGA TGTAGCTACCATCTGCTATACAAGTGGCACAACTGGGACACCCAAGGGGGCTATGTTGAGCCATGATAATCTGATAGCTAATGTGGCCGGTGCTACATGC ACCACTAAATTCTACCCGTCAGATGTTTACATATCATATCTACCCTTGGCACACATTTATGAACGGGCAAATCAGGTCATGACAGTTTATTTTGGAGTAG CTGTTGGATTTTACCAAGGGGATAACATGAAACTGATGGATGATTTGGCTGCACTTAGACCGACCATATTCTGCAGTGTTCCTCGGCTGTACAATAGAAT ATATGATGGTATCACCAACACCGTGAAGAGTTCTGGCGGTCTAAGGGAAAGGCTGTTCAATGCTGCGTACAATGCCAAAAAGCAGGCTTTACATAGTGGC AAGAAGGCATCCCCAATGTGGGACAGGTTAGTGTTCAACAAGATTAGAGATAAACTTGGAGGGCGAGTCCGCTATATTGTGTCAGGAGCTTCACCCTTAT CCCCTGATGTCATGGAGTTTATGAAGATCTGCTTAGGTGGGCATGTTCTTGAAGGATATGGAATGACTGAAACTTCCTGTGTCATAAGTGCCATGGATGA AGGTGACAACCAAATCGGCCACGTTGGGTCTCCTAATCCAGCTTGCGAAGTAAAGCTTGAGGATGTTCCTGAAATGAACTACACTTCCGAGGATAAGCCT TATCCTCGTGGTGAAATATGTGTGAGGGGTCCCATTGTTTTCCAAGGGTACTATAAAGATGAAACTCAGACGTACGATCCCCCTTATTACCCTTCATCTT CTCTAGGTCTTGCCTTCGGCACTGATTTGTTTACTGATGATGCAATGTTACCATTCAGGAGAGAAGTAATTGATGGAGATGGCTGGCTTCATACTGGAGA CATTGGATCATGGTTACCTGGAGGACGTCTAAAGATCATTGATAGGAAGAAGAACATTTTCAAGCTAGCACAAGGAGAGTACATAGCTCCAGAGAAGATA GAGAATGTATATGCTAAATGTAGATTCGTCGCTCAGTGCTTTGTGTATGGTGATAGCTTCAACTCGTCTCTGGTAGCTGTTATTGCTGTTGACCCAGATG TGTTGAGAGATTGGGCTGCCTCTCAAGGCATCAAGTATCAGAACTTGGACCAACTGTGCAAAGACAGAAGAACACGAGCTGCAGTGTTGGCTGATATGGA TGCCATTGGAAAAGAAGCTCAGCTAAGAGGGTTTGAGTTTGCAAAAGCTGTGACTTTGGTGCTGGAACCATTTACATTAGAGAATGGACTTCTGACACCA ACTTTTAAGATAAAGAGAGCTCAAGCAAAGGAATACTTCCAGAATGCTATATCAGAACTGTACAAAGAGCTTGCTGCGTCTGAAACTCCTGCTAAGTTAG CATTATGA
AA sequence Show only first row Show all	>Lus10002454 pacid=23168987 polypeptide=Lus10002454 locus=Lus10002454.g ID=Lus10002454.BGIv1.0 annot-version=v1.0 MEEPKGLMTTAAQRRMKTIHDHLTASSAAHESSPSNQLCQSPTAGEFFSEQGYSVVLPEKLQTGKWNVYRSVRSPLKLVSRFPNNPEIGTLHENFVRAVD VYRDYKYLGTRIRVDGTVGDYKWMTFGEAGTARTSIGSGLMHHGIEKGASVGLYFINRPEWIIVDNACAAYSYVSVPLYDTLGPDAVKYIVNHAMVQAIF CVPQTLNSLLSFLSEIPSVRVIVVVGGIDDQIPSLPSSAGVQVVTYSKLLSQGRSNLHPFCPPKPEDVATICYTSGTTGTPKGAMLSHDNLIANVAGATC TTKFYPSDVYISYLPLAHIYERANQVMTVYFGVAVGFYQGDNMKLMDDLAALRPTIFCSVPRLYNRIYDGITNTVKSSGGLRERLFNAAYNAKKQALHSG KKASPMWDRLVFNKIRDKLGGRVRYIVSGASPLSPDVMEFMKICLGGHVLEGYGMTETSCVISAMDEGDNQIGHVGSPNPACEVKLEDVPEMNYTSEDKP YPRGEICVRGPIVFQGYYKDETQTYDPPYYPSSSLGLAFGTDLFTDDAMLPFRREVIDGDGWLHTGDIGSWLPGGRLKIIDRKKNIFKLAQGEYIAPEKI ENVYAKCRFVAQCFVYGDSFNSSLVAVIAVDPDVLRDWAASQGIKYQNLDQLCKDRRTRAAVLADMDAIGKEAQLRGFEFAKAVTLVLEPFTLENGLLTP TFKIKRAQAKEYFQNAISELYKELAASETPAKLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	0	1
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10006410 [exp]	1.0	0.8857
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10010585 [exp]	2.2	0.8395
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	2.4	0.8744
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	3.5	0.8372
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	3.9	0.8620
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10032358 [exp]	5.7	0.8451
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10027897 [exp]	6.5	0.7878
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10016736 [exp]	10.4	0.7903
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	11.2	0.7954
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	11.5	0.8280

Compare expression of checked genes

Lus10002454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.