Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05980 140 / 3e-40 unknown protein AT5G19340 134 / 1e-37 unknown protein AT5G66800 40 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010529 [exp] 191 / 1e-61 AT5G19340 98 / 1e-25 unknown protein Lus10041215 [exp] 133 / 6e-38 AT5G19340 94 / 2e-23 unknown protein Lus10009349 [exp] 41 / 0.0004 AT5G66800 113 / 5e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G150300 [exp] 248 / 2e-82 AT3G05980 154 / 3e-46 unknown protein Potri.010G090700 [exp] 215 / 1e-69 AT3G05980 141 / 2e-41 unknown protein Potri.007G042600 [exp] 47 / 4e-06 AT5G66800 121 / 4e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002455 pacid=23168991 polypeptide=Lus10002455 locus=Lus10002455.g ID=Lus10002455.BGIv1.0 annot-version=v1.0 ATGAAAGAAACACTGCTTTCTATGGAAACAGTTCAAGCACCCTCCAGATCCACCACCATTGATCAGATTTCCAGCCCTAGAATCTCTTTCTCCGCCGAAT TCCTCGACGACAACAACCACTTCATCTCCATCACCCCAACCCACCTAATCGACAACCCCGATACTAACAATTCCCAAAAGCCACCCCAGTCCCCCACACG AAACGGCGCCGCCGTCGGAGACAATCAATTCGAGTTCCTCTCAAGCGGCGGAGAGCCGAAATCTGGACACGCCAGGATGCTCACCGCCGACGAGCTCTTC TTCGAAGGGAAGCTCCTCCCTTTCTGGCAAATGCAGCAGTCGGAGCGGCTTAACAAGATCAGCCTCAAATCCAAGGAAGAAGGAGACGAGACGATACTGA GAAAAGAAGATCCGCTGCCGCCGCCGACGCCTACAACCGCGGCGGCGATGAACTGGTTCGTGGACGACGATCCGTCGCCGCGGCCGCCGAAATGTACGGT GCTGTGGAAGGAGCTGCTGAGGCTGAAGAAGCAGAGGCCCAGTGTTTCGTCTCTTTCCCCATCTTCCTCTTCGTCGTCGACTTCGTCGTGTTCGAGCTCG CTCGGTGATGCGGCGACCAAGGAGGAATCAGGGAAAGGAGAGAAAGACAACAATAAGGAGAGCAATAAGAAAGGGAACCATCAGCAGCAGGTGAAGAGAG CGAAGAAAGGTCTGGAGAGGACGAGATCTTCGAGCATTAGGATTAGGCCGATGATTAATGTCCCAATTTGCACCCAGATGAAGAGCAGCCATCATCACAG TGCATTGCCGCCCTTCTTTCCTCTGAAGAAAGGCAGAGTGTTGGAGAGGTGA
AA sequence Show only first row Show all	>Lus10002455 pacid=23168991 polypeptide=Lus10002455 locus=Lus10002455.g ID=Lus10002455.BGIv1.0 annot-version=v1.0 MKETLLSMETVQAPSRSTTIDQISSPRISFSAEFLDDNNHFISITPTHLIDNPDTNNSQKPPQSPTRNGAAVGDNQFEFLSSGGEPKSGHARMLTADELF FEGKLLPFWQMQQSERLNKISLKSKEEGDETILRKEDPLPPPTPTTAAAMNWFVDDDPSPRPPKCTVLWKELLRLKKQRPSVSSLSPSSSSSSTSSCSSS LGDAATKEESGKGEKDNNKESNKKGNHQQQVKRAKKGLERTRSSSIRIRPMINVPICTQMKSSHHHSALPPFFPLKKGRVLER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05980			unknown protein		Lus10002455 [exp]	0	1
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031279 [exp]	1.4	0.8879
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10029905 [exp]	3.7	0.8530
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10005784 [exp]	4.0	0.8437
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Lus10028097 [exp]	5.5	0.8462
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10028106 [exp]	12.0	0.8435
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	12.6	0.8655
AT3G22670			Pentatricopeptide repeat (PPR)...		Lus10041193 [exp]	14.7	0.8638
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	15.4	0.8706
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	19.3	0.8533
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	20.4	0.8497

Compare expression of checked genes

Lus10002455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.