Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05990 527 / 0 Leucine-rich repeat (LRR) family protein (.1) AT3G19230 403 / 6e-136 Leucine-rich repeat (LRR) family protein (.1) AT2G37050 176 / 7e-48 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G67720 169 / 6e-45 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 154 / 6e-40 Leucine-rich repeat protein kinase family protein (.1) AT3G46350 152 / 3e-39 Leucine-rich repeat protein kinase family protein (.1) AT1G28340 151 / 3e-39 AtRLP4 receptor like protein 4 (.1) AT4G29990 148 / 9e-38 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G14510 147 / 2e-37 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 144 / 2e-36 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010528 [exp] 641 / 0 AT3G19230 395 / 4e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10002405 [exp] 422 / 2e-143 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10027903 [exp] 420 / 3e-142 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10036935 [exp] 181 / 1e-48 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 180 / 2e-48 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019907 [exp] 172 / 1e-45 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 171 / 2e-45 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 160 / 1e-41 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 151 / 9e-39 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G150200 [exp] 607 / 0 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 602 / 0 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G102300 [exp] 431 / 6e-147 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G052800 [exp] 184 / 6e-50 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 181 / 5e-49 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 181 / 8e-49 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G181200 [exp] 180 / 2e-48 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G043700 [exp] 162 / 2e-43 AT3G46280 216 / 3e-63 protein kinase-related (.1) Potri.013G030800 [exp] 157 / 2e-41 AT2G19210 224 / 2e-63 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.004G047300 [exp] 147 / 7e-38 AT1G28340 928 / 0.0 receptor like protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002456 pacid=23168992 polypeptide=Lus10002456 locus=Lus10002456.g ID=Lus10002456.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCACCCTTCATCTTCCTCTCGCTCCTCCCTTTCCTTCTCTCCCTTCCCCTCGCCCAGACAGATACTTTAATTGATTGTGGCGCCACCGTTC CTTCCACAATCGCCGGCCGCCAATGGCTTTCGGATGACGGCTACGTCTCCGCAGGTACCTCCAAGCGCCTTGATGTCACCGTTCTATCACCGATCCTCTC CACCGTCCGATCCTTCCCTCTGGCGGGCAATCGCGGCCGTAAGTTCTGCTACTGGGCTCCCGTCACCCAAGGCGGCAAGTACATGGTCCGGAGCACCTAC TTCTACGGGTGGGTCAACGGAAGAGATGAGCCGCCGCCGATCTTGGACCAGATCGTGGACGGGACTCTATGGAGCGTGGTCAACACGACTGCCGATTTCG CCAACGGCATGTCCACCTTCTCCGCAGGGGTTTTCTTTGCTCGAGGCAAGACCATGAGCCTCTGTCTCGGGGCGAATCCGGATACACGATCCGACACGTT CATTTCCGCCCTGGAGTTCGTTCTCCTGGGCGATTCACTCTACAACTCCACTGATTTTAACAACTTCGTTCTCACCTTGGTCGCCAGGCACAGTTTTGGC CACAGCGAAATCGTCAGATATCCGGATGATCCTTATGATCGCATTTGGGAGCCATTCGGAGGCAAGGATTCCAACCCTTCGGGAAACAGAAACGTTTCTA TTTCTGGCATATGGAATCTTCCACCTTCCAAGGTGTTCGAGACAGATATATCCGCAGTAGCAGGACAATCAAGGCAGGCGTTGGAGCTCTCTTGGCCTCC AGCTCCACTTCCAATTCCCCACCAGAATTACTCGATTGCTATGTACTTCGCCGATGATCGATCATCATCGCTTGAAGATCCTAGGGTGCTTGATGTCGCC ATAAATGGGGTGACCTATTTCAAGAATTTGAGTTTAACACAAATGGGTTCTCTTGTCTTTGCTAAGCTGTGGCCTCTTGGTGGTCTCACCAATATAACGT TGACCTCGGCTGCTGGCTCAGCCAGTCCATTGATCAATGCTGGAGAGGTGTTTAGATTGATGCCTGTTGGTAGAAGAACGCATACCGGAGACATAATAGC CCTGGAGGAATTGAGAAGAGGTTTCAACAACCCACCACAGGATTGGAACGGTGACCCATGCATGCCCCGTCAGTATCCTTGGACAGGGATTACTTGCTCG GATGGAAGGAGAATCCGTGTAGTTACATTAAATTTAACAAGTATGGGTCTCTCTGGATCAATATCGCCCAGGATTGCTAAGTTGACTGCGGTTACAGACA TATGGCTTGGCAACAATAGATTGTCGGGGTCAATACCCAATCTGAGGTCGTTGAGATTGCTTCAAACTCTGCATTTGGAAGACAATACCTTATCTGGAGC GATTCCATCTTCACTAGGCAACATCACTGATCTCCGTGAAATATACTTACAGAACAATAATCTGGGTGGCGAAATCCCTAAAAGCCTCACCGGAAAGCCT GGACTAGACCTCAGGACGAATCCTGGGAATCATTTCTTGCCCGGACCACCTTCATGA
AA sequence Show only first row Show all	>Lus10002456 pacid=23168992 polypeptide=Lus10002456 locus=Lus10002456.g ID=Lus10002456.BGIv1.0 annot-version=v1.0 MAAPPFIFLSLLPFLLSLPLAQTDTLIDCGATVPSTIAGRQWLSDDGYVSAGTSKRLDVTVLSPILSTVRSFPLAGNRGRKFCYWAPVTQGGKYMVRSTY FYGWVNGRDEPPPILDQIVDGTLWSVVNTTADFANGMSTFSAGVFFARGKTMSLCLGANPDTRSDTFISALEFVLLGDSLYNSTDFNNFVLTLVARHSFG HSEIVRYPDDPYDRIWEPFGGKDSNPSGNRNVSISGIWNLPPSKVFETDISAVAGQSRQALELSWPPAPLPIPHQNYSIAMYFADDRSSSLEDPRVLDVA INGVTYFKNLSLTQMGSLVFAKLWPLGGLTNITLTSAAGSASPLINAGEVFRLMPVGRRTHTGDIIALEELRRGFNNPPQDWNGDPCMPRQYPWTGITCS DGRRIRVVTLNLTSMGLSGSISPRIAKLTAVTDIWLGNNRLSGSIPNLRSLRLLQTLHLEDNTLSGAIPSSLGNITDLREIYLQNNNLGGEIPKSLTGKP GLDLRTNPGNHFLPGPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05990			Leucine-rich repeat (LRR) fami...		Lus10002456 [exp]	0	1
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	2.2	0.8679
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	16.2	0.8898
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026908 [exp]	22.5	0.8850
AT4G04955		ATALN	allantoinase (.1)		Lus10018186 [exp]	28.9	0.8633
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	36.1	0.8531
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	46.9	0.8592
AT1G51720			Amino acid dehydrogenase famil...		Lus10006872 [exp]	60.4	0.8250
AT2G38840			Guanylate-binding family prote...		Lus10003084 [exp]	110.2	0.8358
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	124.0	0.8419
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	130.5	0.8256

Compare expression of checked genes

Lus10002456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.