Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37640 429 / 2e-143 ACA2 calcium ATPase 2 (.1) AT2G22950 423 / 3e-141 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT1G27770 414 / 1e-138 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT2G41560 352 / 1e-113 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 347 / 5e-112 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT5G57110 293 / 2e-91 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G29900 291 / 1e-90 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT3G63380 288 / 6e-90 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G21180 286 / 1e-88 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G22910 270 / 3e-83 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025199 [exp] 499 / 3e-171 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10011522 [exp] 483 / 3e-164 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10007736 [exp] 417 / 2e-139 AT1G27770 1528 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10018687 [exp] 417 / 1e-138 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10019300 [exp] 402 / 4e-133 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10018044 [exp] 358 / 1e-122 AT2G41560 709 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10019758 [exp] 352 / 5e-116 AT2G41560 1007 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 355 / 9e-115 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 352 / 9e-114 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016600 [exp] 436 / 5e-146 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.007G055500 [exp] 434 / 3e-145 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.016G043100 [exp] 360 / 4e-117 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.006G046500 [exp] 356 / 2e-115 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.001G020600 [exp] 348 / 4e-112 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 336 / 9e-108 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.018G139800 [exp] 295 / 7e-92 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.013G040201 [exp] 290 / 8e-91 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G215600 [exp] 286 / 5e-89 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G072900 [exp] 286 / 8e-89 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus
Representative CDS sequence Show only first row Show all	>Lus10002458 pacid=23162243 polypeptide=Lus10002458 locus=Lus10002458.g ID=Lus10002458.BGIv1.0 annot-version=v1.0 ATGATTCCTAGCTCGTTTCTTATTCATTCCAGGATTCTGATAAAGAAGGAAACATTGAACACTCTTGTTTTTGCAGGTCATGGCGCGATCTTCACCTCTT CACCTCTTGACAAGCACACACTGGTGAGACATTTGCGAACTACATTTGATGATGTAGTTGCTGTTACTCGGGATGGAACTAATGATGCTCCAGCACTTCA TGAAGCAGATATTGGTCTTGCAATGGGCATAGCCGGAACTGAGGTGGCTAAAGAGAGTGCTGACGTTATCATCCTGGATGATAATTTCTCAACAATCGTG ACAGTGGCCAAATGGGGACGTTCAGTTTACATCAACATCGAAAAGTTTGTACAGTTCCAGCTGACAGTTAACGTGGTTACCTTGATAATTAACTTCTCTT CAGCTTGTATGACAGGAAGTGCACCCCTCACAGCTGTCCAACTTTTGTGGGTAAACATGATCATGGATACACTTGAAGCTCTTGCACTGGCAACAGAGCC TCCAAACAATGCACTAATGAACCGCCCACCTGTTGGAAGGAAAGGCCATTTCATCACTAATGTCATGTGGAGAAATATTTTAGGGCAGTCCATTTATCAG TTCTTGATCATATGGAAGCTCCAAGCTTCAGGGAAATCCACGTTTGAGCTTGAAGGCCCTGATTCTGATCTTGTTTTCAACAAGATAAGCTCTCGCGAGA TGGAGTCAACCAACGTGTTGAGAGGCATACTGAACAACTATGTGTTTGTTACGGTTCTAGCAGCCACTGTGTTTTTCCAGATCATAATAATTGATTTCCT GGGAACATTTGCAAACACAACTCATCTGACATCTGAGCAGTGGAAAACTAGTGTGTTCATCGGATTCCTCGGTATGCCAATTGCTGCTATCTTGAAGCTG ATCCCCATATAA
AA sequence Show only first row Show all	>Lus10002458 pacid=23162243 polypeptide=Lus10002458 locus=Lus10002458.g ID=Lus10002458.BGIv1.0 annot-version=v1.0 MIPSSFLIHSRILIKKETLNTLVFAGHGAIFTSSPLDKHTLVRHLRTTFDDVVAVTRDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIV TVAKWGRSVYINIEKFVQFQLTVNVVTLIINFSSACMTGSAPLTAVQLLWVNMIMDTLEALALATEPPNNALMNRPPVGRKGHFITNVMWRNILGQSIYQ FLIIWKLQASGKSTFELEGPDSDLVFNKISSREMESTNVLRGILNNYVFVTVLAATVFFQIIIIDFLGTFANTTHLTSEQWKTSVFIGFLGMPIAAILKL IPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10002458 [exp]	0	1
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020034 [exp]	10.4	0.8078
					Lus10032858 [exp]	17.3	0.8053
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	24.1	0.7717
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	31.2	0.7786
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Lus10011451 [exp]	33.7	0.7516
AT4G36980			unknown protein		Lus10009350 [exp]	34.7	0.7768
AT5G59700			Protein kinase superfamily pro...		Lus10020474 [exp]	43.7	0.7241
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	52.0	0.7305
					Lus10016961 [exp]	69.6	0.7169
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	70.5	0.6808

Compare expression of checked genes

Lus10002458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.