Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64960 800 / 0 HEB1 hypersensitive to excess boron 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025197 [exp] 401 / 4e-129 AT1G64960 137 / 7e-36 hypersensitive to excess boron 1, ARM repeat superfamily protein (.1) Lus10025198 [exp] 199 / 3e-59 AT1G64960 105 / 7e-28 hypersensitive to excess boron 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G055400 [exp] 984 / 0 AT1G64960 1127 / 0.0 hypersensitive to excess boron 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12422 [flax] [poplar] Condensin2nSMC Condensin II non structural maintenance of chromosomes subunit
Representative CDS sequence Show only first row Show all	>Lus10002459 pacid=23162238 polypeptide=Lus10002459 locus=Lus10002459.g ID=Lus10002459.BGIv1.0 annot-version=v1.0 ATGGAGAAGCGGCTCTGCTCGTCTCTTAACTCCTCCGTCGACGATTTCCTGTCCTCCGCTGTCAAGCTGTCTCTCAAATCCAGCAAGTCCTCCCTCAAGA CTCTAATTTATTCCATCTCTCCATCTTCTTCCCCCTCTGCCACTTTGCCTTCTTCCATCCACCGCTTTATTTCCGATTCCATTGCCTCTTTCCAGAACCT TAGTCAACCTTCACCAACGTCGCCGCCGCCTCGTTCACCGGAAACATCCAGATCCCCTCCTTCCAAACGCCCTCGCAGATCCTCCCGAAGGACCAGTACC AGCTCTTTCCGGAGAAACGAGTCTGGTTCCTCCCATCATGAAACCAACACCATCCACGAGAAGCAACGTATCCTCGAGGGTGTTCAAGTTCTCGCTTACC TAACCTTCCTTTGCGTCTCGCATCCTAAGAAGCTGTTTCCAGGCGGGGAACTGTTGCCTGCGGTTCAGCTGCTCCACGATAACTTGATTCTGTTCGAGTC GGACTCCAATTTGTTGTCTGAGATTTCAAATCTCTGCGAGGAGTGTTGGAAGGAAGAATTCCCCGGGAGGGAGCTTCTTATCTCGCAATCATTGCCGTTC TTACTGTCGCGGTCGCTGACTTTGAAGAAGAAGGTGGATGTGCACAGAGTTTATGTTCTCCGCGAGGCATTTTCATTGTTTGATTTTGAGGATGAGAGCA TTGAGGACTTGAAATTATTGCTGATGCGGTGTTTGATTGCTCCTCTGTATTTGAAAACGGAAGATGGTAAGAAATTTCTAGCAGTCGTGCTTGGGTTGAG TAAGCAGGTGCTTAAGGAGGCTTTGGCCATGATGAAGTCTCAGATTCCATTTGGAAGGAAGTCGATGTTGGAGGCATATGGGGAGATTTTGTTTAGGGCA TGGAAAGGAGTTCAAGGGGATTTGAAGGATGAGATTGAGAGCGGATTCTTGCAAACATTGATTGAGGGTGCTATTCACGCGAGCTCTGGGCCACTTGCAG CTTCTATCAGGCGGATTTTGGCTGGATTTGTTACTCAAAGGATCACTGAAGGAGTTGACAAGCTGCTCTTCAGGCTAGCTGAGCCTGTGATTTTCCGCTC GCTGCAGGTTGCCAATTCAAATGTTCGCCTTAATTCTTTGCATTTGCTTTTGGACCTGTTCCCCCTTGAAGATCCTGATTCAACCAAAGAAGCTAAGGAT ACACAGTTGGACAAACAGTTCTTTTTATTGGAGAAGTTACTTGTGGATGAGTGTCCTGCAGTGAGAGTGGTAGCGGTGGAAGGTTGCTGTCGCATCCTCC ATCTGTTTTGGGAAATCATACCTTCTCCCACAATTACAAAGATACTCACAAATATATTTGATGACATGTCGCATGATATGTGTAGTGAGGTTAGGGTTTC CACAGTGAATGGTATAGCTTATTTGCTTGGGAATCCTCAGTCTCATGAAATCCTCAAAGTGCTACTATCCAGATTGGGGCACCTGATTTTGGATAACGTT ATCTCAACCCGCATTGCTGTTTTGGATCTCCTCCTGGTTGTAAGGGATATTCGATCATTTCAGTTTAATAAGGTGGTTGCTCTTGATGCTTTATTAGCAA CTCTTGTGAATGATCAATCCCAAATATGCCAGAAGATAACAAGACTACTTATCCCATCTTACCTTCCCTCAAAAGTTGACGAAGGAGAAGCATGTAGTCG TTGCATGACTCTCATAAAGAGGTCTCCTATGGCTGGTGCAAGGTTTTGTGAATTTGCTGTATCCGAAGGTGCATCACTAAAACATGCCCTGGAGATAGTC CAAGGATTGATCAAGTTTGTTCTCTCACATAATAAGGCTAAAGAAGATCAAATCGAGGGTGCACTTGTTGCTTCTGCTCACCTATGTAACAGTCTAGTCA GTGAACCTCAATACAGGACTATCCTTAAAGAGTTCATTTGCAGCGTAAAAGCAAAGAGCTTGTTTTCTGCAGCATCCACTCCACGTGCTCAATCATCTCT TATCAACATCTATCGCACTGTCTCCCCAGATGATGTGACTGAGCATGTTGAAGAGTGCATGCACCTTATAACTTCCTGTAATAGAGTATCTCATGATTAT GAAATCCAAGCTGAAGTGAGGTCTGCTCATAAGTTGTTGATGTCTTGTGATGCCTTTGATCATATGTTCCAGTCTTTGATCAATATTTTGGAGAAGACGA CCTATCGTTGCCATGTCAAATTCGGGATTGATATGCCGGTGAAGATACCGAGCGAGAAATGGAAAAGAGGCAAGTCAGCAGTTAAATCTTCAGCTAAGTG GAAGCACGTGAGTGGGAAAAAGGCCTCCAATTTCGAGGATGATTATTCAATTGCTGTGGCTGCAGCTTGGCAAATCAAAGAGCTGCTTATGTTTGAGGAT AGTCAAAAGGCTGTCTTAGGGTCTCAATTTCTAGAACAGGCATTTCTTGCTTTAAAGGTTATTTCGGAGGTCACCATCTTGCAGTTTCAGTGCTGTGAAT ATATGGATGTTGAACCTGTTTTAGCATATATGTCGCTCTCCTTGCATATAACTCTTCAAAGCTTAAGCATGGGAATTAAAGATGATTCTGTTCCCAAGCA CAACTCTGCAGCTGATGATGGTTCAGTTTTAACATCAGAGTCTTTGATCAATATTTTGGAGAAGACGACCTATCGTTGCCATGTCAAATTCGGGATTGAT ATGCCGGTGAAGATACCGAGCGAGAAATGGAAAAGAGGCAAGTCAGCAGTTAAATCTTCAGCTAAGTGGAAGCACGTGAGTGGGAAAAAGGCCTCCAATT TCGAGGATGATTATTCAATTGCTGTGGCTGCAGCTTGGCAAATCAAAGAGCTGCTTATGTTTGAGGATAGTCAAAAGGCTGTCTTAGGGTCTCAATTTCT AGAACAGGCATTTCTTGCTTTAAAGGTTATTTCGGAGGTCACCATCTTGCAGTTTCAGTGCTGTGAATATATGGATGTTGAACCTGTTTTAGCATATATG TCGCTCTCCTTGCATATAACTCTTCAAAGCTTAAGCATGGGAATTAAAGATGATTCTGTTCCCAAGCACAACTCTGCAGCTGATGATGGTTCAGTTTTAA CATCAGAGAAATCTGTACTGGACCAAACAGTGGACCACATTCTTAACTCCGTAGAAAGACTTCTAGAAGGTTCGTGTGATTCTAATTCTGACTCCAGGCC AGATAATATGGAGGATGATTGTAATGGGAAGCGACAGAGAGAGCATCAAACAGATGTATCAATATCAAATAATGATGGATTGGAGAATACCAAAGGAAAA AGAACAGCAAATAAGCTGAAGATGCTTACTGCAGTGCTCAAGTTCATCACTGATTCTACTGCAATGGAATTCTTGTCTCACATTCATGGAAGATGCTTAG CATTCTCTTCGTCCTACTTAAAAGATATCATGTCTGCTTTGGGTCCACAGCCACGTGAGAAGTTGTCCGACTATCTGTCAAAAGATGTATTTATTTGTCT GAAGAGCTCGTTTAGTTATGCAGCGAAGTTACTCAATATGATACTAAAGGACATGAGTGAAGCTTCAGAACCTCCAATAGAGGCTTTCAAACTTGCCAAC ATCTTGTTTGATCTAATCGTATCCGTTGAATTACAGTTTGGGTCTCGTCTAGCAGCATCTCTTGTTGCAGCAGCAAAGCCTTGGCTACCTGATCTAATTC TTGCACTGGGATCTGGAACGACACTCAGTAGGAAGGAAGAAATCACAAGCTCGGCTGCATTAGTGCAGGTAAAGCTCCATTTCCCATCATGGCTACTCAT GCTAGCAAAGTTTGAGGTGGATCAAGTTAAGAAGATGAACTCCGAAGAGCAGAAGGAAGATGGAAGCATTCCAGAAAGAGAGAAGTTTCCAGTATTCAAA AGATTCATCGATATGATGGTGGAAATGTTGAAAGCAAACAGAAGGGTAATGGATGCCATTGGTTTGATTTTCTTAACAGGATCATCTGTCGGATTGGAAA GAAGGGAGTTTGGATTAGTACTGGGGATGCTCCGCTTTGTGTGCCACAAACTTGTGGGGAAAGAGGATAGAGAATGGAGTCAACTTGATGGGATGTTGGC TTCCCTCCCAAGCATTTTCCCTCAAATTGAGAGGGAGGTTGAGGAGCAAAATGGTGGTGAAGATTCGAGTAAAGAATTGGACAAGGCTAGAGAATTGCTT GAACCAGTTTGGTTGTACCATGTCTATGAAACTGAGAGGTTTCGTGCAACTGAGGAATAA
AA sequence Show only first row Show all	>Lus10002459 pacid=23162238 polypeptide=Lus10002459 locus=Lus10002459.g ID=Lus10002459.BGIv1.0 annot-version=v1.0 MEKRLCSSLNSSVDDFLSSAVKLSLKSSKSSLKTLIYSISPSSSPSATLPSSIHRFISDSIASFQNLSQPSPTSPPPRSPETSRSPPSKRPRRSSRRTST SSFRRNESGSSHHETNTIHEKQRILEGVQVLAYLTFLCVSHPKKLFPGGELLPAVQLLHDNLILFESDSNLLSEISNLCEECWKEEFPGRELLISQSLPF LLSRSLTLKKKVDVHRVYVLREAFSLFDFEDESIEDLKLLLMRCLIAPLYLKTEDGKKFLAVVLGLSKQVLKEALAMMKSQIPFGRKSMLEAYGEILFRA WKGVQGDLKDEIESGFLQTLIEGAIHASSGPLAASIRRILAGFVTQRITEGVDKLLFRLAEPVIFRSLQVANSNVRLNSLHLLLDLFPLEDPDSTKEAKD TQLDKQFFLLEKLLVDECPAVRVVAVEGCCRILHLFWEIIPSPTITKILTNIFDDMSHDMCSEVRVSTVNGIAYLLGNPQSHEILKVLLSRLGHLILDNV ISTRIAVLDLLLVVRDIRSFQFNKVVALDALLATLVNDQSQICQKITRLLIPSYLPSKVDEGEACSRCMTLIKRSPMAGARFCEFAVSEGASLKHALEIV QGLIKFVLSHNKAKEDQIEGALVASAHLCNSLVSEPQYRTILKEFICSVKAKSLFSAASTPRAQSSLINIYRTVSPDDVTEHVEECMHLITSCNRVSHDY EIQAEVRSAHKLLMSCDAFDHMFQSLINILEKTTYRCHVKFGIDMPVKIPSEKWKRGKSAVKSSAKWKHVSGKKASNFEDDYSIAVAAAWQIKELLMFED SQKAVLGSQFLEQAFLALKVISEVTILQFQCCEYMDVEPVLAYMSLSLHITLQSLSMGIKDDSVPKHNSAADDGSVLTSESLINILEKTTYRCHVKFGID MPVKIPSEKWKRGKSAVKSSAKWKHVSGKKASNFEDDYSIAVAAAWQIKELLMFEDSQKAVLGSQFLEQAFLALKVISEVTILQFQCCEYMDVEPVLAYM SLSLHITLQSLSMGIKDDSVPKHNSAADDGSVLTSEKSVLDQTVDHILNSVERLLEGSCDSNSDSRPDNMEDDCNGKRQREHQTDVSISNNDGLENTKGK RTANKLKMLTAVLKFITDSTAMEFLSHIHGRCLAFSSSYLKDIMSALGPQPREKLSDYLSKDVFICLKSSFSYAAKLLNMILKDMSEASEPPIEAFKLAN ILFDLIVSVELQFGSRLAASLVAAAKPWLPDLILALGSGTTLSRKEEITSSAALVQVKLHFPSWLLMLAKFEVDQVKKMNSEEQKEDGSIPEREKFPVFK RFIDMMVEMLKANRRVMDAIGLIFLTGSSVGLERREFGLVLGMLRFVCHKLVGKEDREWSQLDGMLASLPSIFPQIEREVEEQNGGEDSSKELDKARELL EPVWLYHVYETERFRATEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10002459 [exp]	0	1
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	2.0	0.9403
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031042 [exp]	4.9	0.9111
AT3G09100			mRNA capping enzyme family pro...		Lus10027759 [exp]	7.7	0.8484
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	13.0	0.8878
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	14.4	0.9048
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	17.5	0.8795
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	18.7	0.9049
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035722 [exp]	20.2	0.8575
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	21.2	0.8905
AT2G04235			unknown protein		Lus10025175 [exp]	26.3	0.8884

Compare expression of checked genes

Lus10002459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.