Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48200 383 / 1e-123 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008827 [exp] 667 / 0 AT3G48200 925 / 0.0 unknown protein Lus10039976 [exp] 549 / 0 AT3G48200 1074 / 0.0 unknown protein Lus10035212 [exp] 231 / 4e-67 AT3G48200 476 / 3e-149 unknown protein Lus10032047 [exp] 208 / 2e-59 AT3G48200 457 / 2e-142 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079000 [exp] 427 / 2e-140 AT3G48200 1134 / 0.0 unknown protein Potri.012G087400 [exp] 401 / 1e-130 AT3G48200 1075 / 0.0 unknown protein Potri.001G330000 [exp] 237 / 2e-69 AT3G48200 492 / 3e-155 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002461 pacid=23162239 polypeptide=Lus10002461 locus=Lus10002461.g ID=Lus10002461.BGIv1.0 annot-version=v1.0 ATGTTATACACGTTATTCCCTGCAGACATTGTTCCTCCAACTGCTTCTATCACTTCATCATCACCTTTCACAAATTCCTTAAATGTATCTGTAAATATTA CTCTTACTGAGCCATGCAACGCCGGAGGAGAAGGAGAAGAAGGTTTTAGATGCTCATCAGTGGATTCTTGCGATCTGCTAGTGTATGGCGGTGGCCAAGT GATACCATCTTCATTCACCATTCTGGAACCCTACCTCAAGTATTCTCTTGTGGTGGCTTTATCTCATGGTTCCGCATACGGGCGAGTCGTGTTGACAATG AACAAGAACTTTTGTACTGATGCTGCTGGAAACATGTTTACTAGAACAGATACATCTACTTCTTTTGTGCGGTTTGGTGAGTTCAACATTCATTTCTATA GAAGGAGTGTGTTTGTTGACATGAGAACCCTTGTCCCGGAAAGGCTACTTGAGCTTCAAGGTGAAACTAGGACCGTTGAAGCAACTAACAGCGCCAATAA CCTCAAGCTGCATCTCTACTTCTCAGAGCCTATCATGAACTCGTCCGCTCAAGTTCTAAATTCTCTCAACATAAGTGGAGGTGCACTGCTTTCGCTAGGA GGAGAAAGCCTTGGCAACCGTCGATTTGGTTTTACAGTTGTAAATGTTTCTGCCATTTCCATTGTCACAGTTGCACTTCGTTCGGACTCAATTATAAGCA TACCCGGGACTCCTGTCTCTCCAATTGCACCAGCCACTTTCCTCTTTGATTCCGAAAAGCTTGCTGTGAAGCTAAGTACGACGTCTAACACAAGGACACG GGAGCACAACATTCCGGTATCGATAAAGTTCATGAAGCCGGTATTTGGTTTCAACTCTTCCTTTCTATCCATCTCTGGAGGAAAATTGCAGAGGCAAGCC AAGCCGCCTTTCACAGTTCATATAAGTAGGAGCAGTTACATCACAGAGGTGCAAGCTGATGGTGACATAGTATCTATTAGTGTTCCGGAAAATATAACTT CTGATATTGCTGGAAACAAGAATCTCCCATCCAATGTTCTACAAGTGAGGCACTATTCCATACCCAAAATCTCGTGCATAATATCCAAAATTTCTACGGC TTGCTTCATTGCTACTTGTTTTGTTGCTGGAATGCTTACTGTGTCAACAGCCAGCCTTCAGTCCGTTGGAGCATTTTCAAGGCATCTGCTCTCTTGA
AA sequence Show only first row Show all	>Lus10002461 pacid=23162239 polypeptide=Lus10002461 locus=Lus10002461.g ID=Lus10002461.BGIv1.0 annot-version=v1.0 MLYTLFPADIVPPTASITSSSPFTNSLNVSVNITLTEPCNAGGEGEEGFRCSSVDSCDLLVYGGGQVIPSSFTILEPYLKYSLVVALSHGSAYGRVVLTM NKNFCTDAAGNMFTRTDTSTSFVRFGEFNIHFYRRSVFVDMRTLVPERLLELQGETRTVEATNSANNLKLHLYFSEPIMNSSAQVLNSLNISGGALLSLG GESLGNRRFGFTVVNVSAISIVTVALRSDSIISIPGTPVSPIAPATFLFDSEKLAVKLSTTSNTRTREHNIPVSIKFMKPVFGFNSSFLSISGGKLQRQA KPPFTVHISRSSYITEVQADGDIVSISVPENITSDIAGNKNLPSNVLQVRHYSIPKISCIISKISTACFIATCFVAGMLTVSTASLQSVGAFSRHLLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48200			unknown protein		Lus10002461 [exp]	0	1
					Lus10009699 [exp]	2.2	0.9604
AT1G30590			RNA polymerase I specific tran...		Lus10018154 [exp]	3.6	0.8857
AT2G24960			unknown protein		Lus10042421 [exp]	9.8	0.9088
					Lus10017955 [exp]	13.3	0.9083
AT3G29760			Haloacid dehalogenase-like hyd...		Lus10027135 [exp]	14.1	0.8942
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	14.4	0.9063
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	15.2	0.9044
					Lus10003893 [exp]	18.7	0.8999
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	19.0	0.8305
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	19.1	0.9015

Compare expression of checked genes

Lus10002461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.