Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67470 156 / 9e-45 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 114 / 7e-30 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 95 / 3e-23 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 76 / 2e-16 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 67 / 2e-13 ATFH8 formin 8 (.1) AT3G05470 67 / 2e-13 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 63 / 4e-12 ATFH4, FH4 formin homologue 4 (.1) AT5G54650 60 / 6e-11 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT1G59910 56 / 2e-09 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G07540 51 / 6e-08 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025195 [exp] 249 / 4e-78 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 194 / 4e-58 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 182 / 7e-54 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10008739 [exp] 110 / 1e-28 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 110 / 2e-28 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10004505 [exp] 82 / 1e-18 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 71 / 1e-14 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 71 / 1e-14 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 70 / 2e-14 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G054900 [exp] 193 / 8e-58 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.002G240232 [exp] 115 / 2e-30 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 109 / 2e-28 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G140200 [exp] 107 / 2e-27 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 105 / 9e-27 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 76 / 1e-16 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 68 / 7e-14 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 67 / 2e-13 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 63 / 5e-12 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.010G037900 [exp] 62 / 1e-11 AT1G70140 488 / 4e-162 formin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10002462 pacid=23162236 polypeptide=Lus10002462 locus=Lus10002462.g ID=Lus10002462.BGIv1.0 annot-version=v1.0 ATGGGGCTTGACAAAGTGAGGTCAGTTTTCCAGTACGAGAGACCCAATACACAGGAAAAGTTCTTCCACTCAATGAAGCTGTTTCTCAGAGATGCTCAAG AGGAAATATCCAAAATAAAAACTGCTGAAAGAAAAGTTCAATCTCTGGTGAAAGAGGTTACAGGATATTTTGACGGAGATACAGTGAAAGAGGAAGCCCA CCCTTTCAGAATATTCATGATTGTGAGAGACTTCTTATCCATATTGGATAACGTGTGCAAGGAAGTGGGACAGATGCAGGACAGGACAGTGGTGGGTTCT GCAAGATCCTTCAGAATAGCTCCAAGTGCTTCAATGCCGGTTCTGAACAAATACAGTGCAAGAAAGGATCATACAAGCTCTGACAAGATAGTTTGTCCCC TTGATATGTTGTGCATAGAGAGATTACATTCACAGGTAGGACTTGAGATTGATGACATACATAGAAGCCTGTAG
AA sequence Show only first row Show all	>Lus10002462 pacid=23162236 polypeptide=Lus10002462 locus=Lus10002462.g ID=Lus10002462.BGIv1.0 annot-version=v1.0 MGLDKVRSVFQYERPNTQEKFFHSMKLFLRDAQEEISKIKTAERKVQSLVKEVTGYFDGDTVKEEAHPFRIFMIVRDFLSILDNVCKEVGQMQDRTVVGS ARSFRIAPSASMPVLNKYSARKDHTSSDKIVCPLDMLCIERLHSQVGLEIDDIHRSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10002462 [exp]	0	1
AT3G57360			unknown protein		Lus10032322 [exp]	10.5	0.6441
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	25.3	0.6408
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	34.3	0.6227
					Lus10008011 [exp]	37.1	0.6333
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	39.8	0.6045
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10034122 [exp]	45.7	0.6194
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	49.5	0.5959
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	60.6	0.5736
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	66.2	0.5652
AT1G12400			Nucleotide excision repair, TF...		Lus10007001 [exp]	98.4	0.5442

Compare expression of checked genes

Lus10002462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.