Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67470 246 / 6e-77 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 215 / 4e-65 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 202 / 1e-60 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G05470 200 / 4e-60 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 193 / 2e-57 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 184 / 4e-55 AFH3 formin 3 (.1.2) AT5G48360 162 / 1e-46 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 151 / 1e-42 ATFH8 formin 8 (.1) AT1G59910 137 / 1e-37 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G07540 124 / 4e-33 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025195 [exp] 325 / 1e-106 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 265 / 3e-83 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 263 / 1e-82 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10008739 [exp] 214 / 1e-64 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 214 / 2e-64 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10015175 [exp] 187 / 2e-55 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 187 / 2e-55 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 187 / 2e-55 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10043077 [exp] 187 / 3e-55 AT5G54650 636 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G054900 [exp] 270 / 8e-86 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.017G009900 [exp] 229 / 1e-70 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G140200 [exp] 223 / 5e-68 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 219 / 1e-66 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 216 / 2e-65 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 198 / 5e-59 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 196 / 2e-58 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G119900 [exp] 193 / 1e-57 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 188 / 1e-55 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 185 / 1e-54 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10002463 pacid=23162241 polypeptide=Lus10002463 locus=Lus10002463.g ID=Lus10002463.BGIv1.0 annot-version=v1.0 ATGGCTCCAACGAAAGAGGAAGAAATAAAACATCGAGACTACGACGGCGATACCTCCAAACTAGGAACTACAGAGAGATTCCTTAAGGCGGTTCTTGACA TCCCATTTGCCTTCAGAAGAGTGGAAGCCATGCTATATAGAGCCAATTTTGACACTGAAGTTACATACCTCAGAAAATGTTTTCAAACGCTGGAGGTAGC AAGCGAAGAACTGAAGAAGAGCCGATTGTTTCTCAAGCTCCTAGAAGCTGTTCTCAGGGTAGGGAACCGTATGAATGTTGGCACAAATCGTGGTGATGCT AAAGATTTTAAGCTCGACACACTATTAAAACTGGTGGATATAAAAGGAACTGACGGAAAGACGACATTGCTCCACTTTGTAGTTCAGGTAATCATTAGAT CGGAAGGTACTACAGGTTGTCTCCCAGAAGAGAAAATTATGGAGAACAAAGTATCAAAGATGAAAGACGAAGACAACTTCAGGAAGCAAGGATTGTTGGT TGTGTCTGGATTGCAATGTGAACAAAGTAGCAGGAATGGAATCTGA
AA sequence Show only first row Show all	>Lus10002463 pacid=23162241 polypeptide=Lus10002463 locus=Lus10002463.g ID=Lus10002463.BGIv1.0 annot-version=v1.0 MAPTKEEEIKHRDYDGDTSKLGTTERFLKAVLDIPFAFRRVEAMLYRANFDTEVTYLRKCFQTLEVASEELKKSRLFLKLLEAVLRVGNRMNVGTNRGDA KDFKLDTLLKLVDIKGTDGKTTLLHFVVQVIIRSEGTTGCLPEEKIMENKVSKMKDEDNFRKQGLLVVSGLQCEQSSRNGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10002463 [exp]	0	1
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006173 [exp]	81.8	0.5264
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10009145 [exp]	129.2	0.4678
					Lus10022247 [exp]	157.9	0.4824

Compare expression of checked genes

Lus10002463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.