Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67470 103 / 4e-27 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT2G43800 74 / 7e-17 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G25500 72 / 6e-16 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT3G05470 66 / 7e-14 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 59 / 3e-11 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT1G70140 58 / 4e-11 ATFH8 formin 8 (.1) AT1G24150 58 / 5e-11 ATFH4, FH4 formin homologue 4 (.1) AT1G59910 51 / 1e-08 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 50 / 2e-08 AFH3 formin 3 (.1.2) AT3G07540 40 / 9e-05 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025195 [exp] 134 / 8e-38 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 102 / 9e-27 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 100 / 1e-25 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10008739 [exp] 72 / 6e-16 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 66 / 6e-14 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10004505 [exp] 64 / 3e-13 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 64 / 3e-13 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 63 / 9e-13 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 63 / 1e-12 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G054900 [exp] 115 / 4e-31 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 87 / 3e-21 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 85 / 1e-20 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 80 / 7e-19 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 77 / 1e-17 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 64 / 3e-13 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.013G017900 [exp] 64 / 3e-13 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G119900 [exp] 62 / 1e-12 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 62 / 2e-12 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 61 / 3e-12 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10002464 pacid=23162237 polypeptide=Lus10002464 locus=Lus10002464.g ID=Lus10002464.BGIv1.0 annot-version=v1.0 ATGCCAAAATCATCGGAGCAGAGTAGCAGAAGCGGAGGAGGAGGAGAATCTTCCTCTGGCAAGACTGACGGAGACGGGAATGACGGGACTAAGCCCAAAT TGAAGCCTCTCCATTGGGACAAAGTTGCAGCAACCTCAGACCACGCCACAGTGTGGGACCAGCTGAAATCTAGTTCATTCCTAATAAATGAGGACATGAT GGAGAGTCTGTTTGGCTGCAATTCGGGCAAAAGAGAAGCCACAAGGAAACCAGGTGTGCCTCCAATTGAACAAGAAAATAGAGTTTTGGATCTGAAGAAG TCCTAG
AA sequence Show only first row Show all	>Lus10002464 pacid=23162237 polypeptide=Lus10002464 locus=Lus10002464.g ID=Lus10002464.BGIv1.0 annot-version=v1.0 MPKSSEQSSRSGGGGESSSGKTDGDGNDGTKPKLKPLHWDKVAATSDHATVWDQLKSSSFLINEDMMESLFGCNSGKREATRKPGVPPIEQENRVLDLKK S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10002464 [exp]	0	1
AT2G43610			Chitinase family protein (.1)		Lus10003586 [exp]	8.5	0.8536
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10028306 [exp]	9.6	0.8552
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	17.9	0.8374
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018157 [exp]	19.7	0.7732
					Lus10035062 [exp]	19.9	0.8408
					Lus10008289 [exp]	22.5	0.8336
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10026188 [exp]	24.2	0.8268
AT2G16190			unknown protein		Lus10011284 [exp]	29.2	0.8114
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10034047 [exp]	29.9	0.8076
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	30.8	0.8114

Compare expression of checked genes

Lus10002464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.