Plant FIBer expression Database

Lus10002465 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13890 44 / 2e-05 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041505
[exp]
56 / 3e-09 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Lus10012588
[exp]
56 / 3e-09 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10002465 pacid=23162245 polypeptide=Lus10002465 locus=Lus10002465.g ID=Lus10002465.BGIv1.0 annot-version=v1.0
ATGATTAGTCTACCATATGAAATCAAAATCGTAATCGCACCAAGATCCTCGCCTCCTCCGACTCATCCGTCACCGTCGGATCCGCATCTTAAAGGCGATC
ACTTCCCTGGCCAACCACTCTCCCCGCACTATTCTATTGATCGTATCCAATCTCGTCGATGTTCTCACCAACGTCGCTTGGAAGCTCTCCGGCTTCCTCG
GGAACCGAGTCATCAGGTCGGGGAGAGATCTGGAGGATCGGCATCATACGAGGCCTTGCCCACTACTGCTTCTGATGCCAATCATATTCAGATGAAGGCT
TTGACCGGCACTAGGTGTTCTCTTGTATTAGGCTTTATGTCTTTGCGGGTTCTCCTGCATCAGGCATTGTGTGTCCATGGATTTTTTCGTATCATACCTT
GTGCCGTTTTGGGTTCTCCCACTTGGGGTTCTCCTGCTCATCATAGCCGTTACTGGTCTGTTCGTTCTCCAATAGATCTATTTGGTACTTTAGTCGAGAG
GTTTTACAGGTACATTTTGAAGAGACGTAAAACTTATGCTCCGGCTACAGTGCCGGACCACTTGATAGGTGGTTGGTGCCTGGTGGTGTAG
AA sequence
>Lus10002465 pacid=23162245 polypeptide=Lus10002465 locus=Lus10002465.g ID=Lus10002465.BGIv1.0 annot-version=v1.0
MISLPYEIKIVIAPRSSPPPTHPSPSDPHLKGDHFPGQPLSPHYSIDRIQSRRCSHQRRLEALRLPREPSHQVGERSGGSASYEALPTTASDANHIQMKA
LTGTRCSLVLGFMSLRVLLHQALCVHGFFRIIPCAVLGSPTWGSPAHHSRYWSVRSPIDLFGTLVERFYRYILKRRKTYAPATVPDHLIGGWCLVV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10002465
[exp]
0 1
AT3G21540 transducin family protein / WD... Lus10022194
[exp]
1.0 0.9652
AT2G40260 GARP Homeodomain-like superfamily p... Lus10007513
[exp]
3.7 0.9650
AT3G14610 CYP72A7 "cytochrome P450, family 72, s... Lus10036823
[exp]
4.5 0.9573
AT5G19440 NAD(P)-binding Rossmann-fold s... Lus10002302
[exp]
5.8 0.9488
AT2G19460 Protein of unknown function (D... Lus10008471
[exp]
6.0 0.9481
AT4G37320 CYP81D5 "cytochrome P450, family 81, s... Lus10024078
[exp]
6.7 0.9622
AT2G38300 GARP myb-like HTH transcriptional r... Lus10017442
[exp]
8.0 0.9492
AT5G57620 MYB ATMYB36 myb domain protein 36 (.1) Lus10001316
[exp]
8.1 0.9462
AT3G50150 Plant protein of unknown funct... Lus10004516
[exp]
8.8 0.9408
Lus10008301
[exp]
8.8 0.9548

Lus10002465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.