Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67460 167 / 2e-50 O-Glycosyl hydrolases family 17 protein (.1) AT1G79480 120 / 2e-32 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT4G26830 106 / 6e-27 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 105 / 2e-26 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 103 / 8e-26 O-Glycosyl hydrolases family 17 protein (.1) AT2G04910 96 / 1e-25 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT2G30933 98 / 3e-25 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT5G35740 93 / 3e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G29380 93 / 1e-22 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G13600 91 / 1e-22 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000278 [exp] 119 / 3e-32 AT1G79480 164 / 7e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10001764 [exp] 118 / 7e-32 AT1G79480 165 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10003803 [exp] 115 / 1e-29 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10010478 [exp] 111 / 2e-28 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10015151 [exp] 103 / 7e-26 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001516 [exp] 99 / 2e-24 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10038801 [exp] 93 / 3e-24 AT5G35740 146 / 1e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10032562 [exp] 99 / 4e-24 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004600 [exp] 97 / 4e-24 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082900 [exp] 135 / 4e-38 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.010G173500 [exp] 128 / 9e-36 AT1G79480 162 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.006G008200 [exp] 120 / 2e-33 AT1G79480 142 / 8e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.011G094400 [exp] 108 / 1e-27 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G016800 [exp] 97 / 7e-26 AT5G35740 156 / 1e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 98 / 8e-26 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G353400 [exp] 100 / 1e-25 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.014G158400 [exp] 102 / 2e-25 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.005G202400 [exp] 99 / 2e-25 AT2G30933 140 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.019G012000 [exp] 97 / 2e-25 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10002466 pacid=23162244 polypeptide=Lus10002466 locus=Lus10002466.g ID=Lus10002466.BGIv1.0 annot-version=v1.0 ATGGCTCCCCTGCTACTCAACCTCTTCCTCCTCCTCATCTGCTTCGTCGGTTTTACTGTTGCAGGTGAAGAAAACATCCAGATCCAAACCAACAACCACA GAAAGCTGTCCCAAATGATAAACCCATATCCAGCAAGGCCAACTCCTCTCCCTCAAACCTCACAGCCACCAATACATTCATCCATAGGCTACTCCATCCC TTCCAACCTCTCCCCTTCTCACTCACCACCGCCATTGGCTCCAACTCCTTCTTATACCTACTACGGAAATACTCTGCCTCCTTGTAATCCCTCCATTGCC CCTGCACCGGAGGTCTTCGTTGCTCAGAAGCTGTGGTGCGTGGCCAAGCCCACTGTTCCGGAGGAGACATTACAGGAAGCGCTTGATTATGCTTGTGGGG AAGGAGGTGCCGACTGTGACGAAATTAAGCCAAGTGGGAGCTGTTTCCATCCTGACACTGTGTTTGCTCATGCTTCCTATGCCTACAACAGCTACTGGCA GAAGTATAAGAGGACTGGTGGAGGAGCCACTTGTAGCTTTGGAGGCACTGCCATGATCATCAATTCTGACCCAAGTTTTCTCCATTGCCGGTTCCTGCTC AGCTGA
AA sequence Show only first row Show all	>Lus10002466 pacid=23162244 polypeptide=Lus10002466 locus=Lus10002466.g ID=Lus10002466.BGIv1.0 annot-version=v1.0 MAPLLLNLFLLLICFVGFTVAGEENIQIQTNNHRKLSQMINPYPARPTPLPQTSQPPIHSSIGYSIPSNLSPSHSPPPLAPTPSYTYYGNTLPPCNPSIA PAPEVFVAQKLWCVAKPTVPEETLQEALDYACGEGGADCDEIKPSGSCFHPDTVFAHASYAYNSYWQKYKRTGGGATCSFGGTAMIINSDPSFLHCRFLL S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67460			O-Glycosyl hydrolases family 1...		Lus10002466 [exp]	0	1
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	1.7	0.9919
					Lus10015654 [exp]	3.7	0.9868
					Lus10007549 [exp]	4.2	0.9861
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	5.1	0.9701
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	5.2	0.9806
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	6.3	0.9858
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	8.4	0.9803
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	10.5	0.9856
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	10.6	0.9760
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	11.5	0.9829

Compare expression of checked genes

Lus10002466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.