Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23060 576 / 0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT4G37580 569 / 0 UNS2, COP3, HLS1 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G67430 446 / 5e-156 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G30090 291 / 3e-95 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025191 [exp] 756 / 0 AT2G23060 584 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10026088 [exp] 344 / 2e-115 AT2G23060 369 / 1e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10002314 [exp] 319 / 1e-106 AT4G37580 335 / 3e-113 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10016904 [exp] 184 / 9e-54 AT4G37580 181 / 3e-53 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G054200 [exp] 629 / 0 AT2G23060 597 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.005G146100 [exp] 598 / 0 AT2G23060 609 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G044100 [exp] 360 / 4e-122 AT4G37580 372 / 4e-127 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.003G182500 [exp] 355 / 3e-120 AT2G23060 368 / 3e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.009G074200 [exp] 341 / 8e-115 AT2G30090 383 / 6e-132 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G279400 [exp] 330 / 8e-111 AT2G30090 374 / 2e-128 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G144700 [exp] 264 / 1e-84 AT2G23060 224 / 2e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10002468 pacid=23162242 polypeptide=Lus10002468 locus=Lus10002468.g ID=Lus10002468.BGIv1.0 annot-version=v1.0 ATGAGAGTCATGGTGGATGATGGAGTTGTAGCAGTAGAAGAAGAAGAGTTGGAAATAAGAGAATATGATCCGATAAAAGACGGACAAGGAGTTGAAAAAG TGGAGAGGAGATGTGAGGTTGGTCCCAGCGGTAAGACCTCTGTCTTCACCGACCTCCTTGGCGACCCTATTTGCAGGGTCCGCCACTCCCCTGCTTTCCT CATGCTGGTTGCTGAAATGAGAGATGGAATTGTGGGTATGATCCGAGGTTGCATTAAAACAGTCACATGCGGACAAAAACTCTCTAGATCAAATCTCAAC CCGACGAATTCACTCCCTGTATACACTAAAGCTGCTTATATACTTGGTCTCCGGGTTTCCCCTACTCACAGGCGAATGGGGATCGGCCTGAAACTTGTTC GAAGGCTTGAAGAATGGTTTCGCGAAAACGGCGTTGAGTATGCTTACATGGCTACTGAAAACGACAACCTCGCCTCCATTGGTCTCTTCACCCATAAATG CGGCTACTCCAAGTTCCGTACTCCTTCCATCCTCGTCAACCCGGTTTACGCCCATACCGTACCCATCTCCAACCGGGTTTCCATCCTCCGACTCTCTACC CTCGACGCCGAGAAGCTGTACCGTCGCCGTTTCGCCACCACCGAGTTCTTCCCCCGCGACATTGATTCGGTTTTGAATAACAAACTTAACCTTGGAACTT TTCTAGCGCTGCCACGTGGATGGGGCAGCGGCGGAAACAACGAAGGGTCCCGGTTTTGTTGGCCCGGTGTGGATAAGTTCCTATCTGACCCTCCAGAGTC CTGGGCCGTGATGAGCCTGTGGAACTGCAAGGACGTGTTCACGCTAGAGGTGCGTGGCGTGTCGCGCGTGAAGAAGGTATTTGCCCTGGCGACGAGGGCG GTTGACAGGGCGCTGCCGTTTTTGAGGCTTCCGTCAGTTCCGGAGCTTTTTAGGCCTTTCGGTTTCCACTTTATGTACGGACTTGGCGGGGAAGGGCCAC GCGCAGGGAAAATGATGAAAGCCCTGTGTGGGCACGCGCACAACCTTGCCAAAGCAGGTGGGAGTAGGGTGGTGGTGACGGAGGTGTCGAATCAGGAGCC GCTGAGGTTAGAGATCCCGCACTGGAAGATGCTATCGTGCGCTGAGGATTTGTGGTGTATTAAGCGGCTCGGGGAAGATTATAGTGACGGCTCTGTTGGT GACTGGACAAAATCACCACCTGGCTTGTCCATTTTTGTTGACCCTAGGGAGATCTAA
AA sequence Show only first row Show all	>Lus10002468 pacid=23162242 polypeptide=Lus10002468 locus=Lus10002468.g ID=Lus10002468.BGIv1.0 annot-version=v1.0 MRVMVDDGVVAVEEEELEIREYDPIKDGQGVEKVERRCEVGPSGKTSVFTDLLGDPICRVRHSPAFLMLVAEMRDGIVGMIRGCIKTVTCGQKLSRSNLN PTNSLPVYTKAAYILGLRVSPTHRRMGIGLKLVRRLEEWFRENGVEYAYMATENDNLASIGLFTHKCGYSKFRTPSILVNPVYAHTVPISNRVSILRLST LDAEKLYRRRFATTEFFPRDIDSVLNNKLNLGTFLALPRGWGSGGNNEGSRFCWPGVDKFLSDPPESWAVMSLWNCKDVFTLEVRGVSRVKKVFALATRA VDRALPFLRLPSVPELFRPFGFHFMYGLGGEGPRAGKMMKALCGHAHNLAKAGGSRVVVTEVSNQEPLRLEIPHWKMLSCAEDLWCIKRLGEDYSDGSVG DWTKSPPGLSIFVDPREI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10002468 [exp]	0	1
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	1.0	0.8087
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10005124 [exp]	2.0	0.7671
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	6.2	0.7410
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	12.8	0.7245
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10002382 [exp]	16.6	0.7208
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	16.8	0.7202
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10036812 [exp]	17.7	0.7142
AT2G24370			Protein kinase protein with ad...		Lus10009896 [exp]	19.9	0.6521
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	20.2	0.6895
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	26.8	0.6827

Compare expression of checked genes

Lus10002468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.