Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71530 416 / 2e-140 Protein kinase superfamily protein (.1.2) AT1G54610 417 / 2e-139 Protein kinase superfamily protein (.1.2.3) AT1G53050 419 / 9e-139 Protein kinase superfamily protein (.1) AT5G50860 408 / 5e-136 Protein kinase superfamily protein (.1) AT1G74330 399 / 5e-131 Protein kinase superfamily protein (.1.2) AT5G44290 395 / 5e-130 Protein kinase superfamily protein (.1.2.3.4) AT1G09600 394 / 8e-129 Protein kinase superfamily protein (.1) AT1G03740 391 / 6e-128 Protein kinase superfamily protein (.1.2) AT1G18670 391 / 1e-127 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G33770 380 / 8e-125 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000584 [exp] 1013 / 0 AT1G53050 429 / 1e-142 Protein kinase superfamily protein (.1) Lus10005801 [exp] 527 / 0 AT1G53050 468 / 2e-157 Protein kinase superfamily protein (.1) Lus10006800 [exp] 516 / 8e-179 AT1G53050 449 / 7e-151 Protein kinase superfamily protein (.1) Lus10012805 [exp] 429 / 2e-144 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 427 / 1e-141 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 422 / 4e-141 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 420 / 9e-141 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 407 / 2e-135 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10001285 [exp] 406 / 3e-134 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065100 [exp] 565 / 0 AT1G54610 435 / 2e-146 Protein kinase superfamily protein (.1.2.3) Potri.007G077600 [exp] 538 / 0 AT1G54610 451 / 8e-153 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 430 / 4e-145 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 425 / 2e-142 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 424 / 3e-142 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 422 / 2e-141 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G226900 [exp] 425 / 4e-141 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 420 / 2e-140 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 419 / 1e-138 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 417 / 1e-137 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10002469 pacid=23159288 polypeptide=Lus10002469 locus=Lus10002469.g ID=Lus10002469.BGIv1.0 annot-version=v1.0 ATGGGTGCTTCACAGGGGAAGTACCCCTCGATTTCGCCGACAAAAGGAGAAGATAACCTGAAGTTGGAAAAGGAGGGGTTGAGGCGAAAGATAAATGGGG AGCACCGGAGATCGCTGGGTCCTCATCGTCATCGGAACTCGAATGAGGCGCGGCCCCCGTTGAGGAGTTATACAGGTGGAAGTACTGAAGGGGATGATCC GTTTAAGGGTACTAGTACTAGTGATCCTTTTGGGGTTGAGGAGACGACTGTGGATGGATGGCCTAAATGGCTCGCTGATAATGTTCCAAGACAGGTTTTG GCTGCTGTTGTTAAGAAGAGTGCTGAAGATTATGATAAACTTGATAAGGTAGGGTCTGGCACCTACAGCAATGTTTACAAAGCTCGAGATAGGGAGAGTG GCAAGATTGTGGCGTTGAAGAAGGTTAGATTCGAGACATCAGAGCCAGAGAGTGTCAAGTTCATGGCTAGGGAGATCATGATACTACAAAAGTTGGATCA TCCTAACGTGGTCAAGCTAGAAGGTATAGCTACATCTAGGTTGCAGTATAGTCTTTATCTCGTCTTTGATTTCATGCAGACAGATCTCCAAACTGTTATC GAGAGCAAACTCACTGAACCCCAGGTGAAGTCGTATATGCAACAACTTCTTTCAGGTTTGCAGCATTGCCACGATAGAGGGATTTTGCACAGAGATATTA AAGGAGCAAACTTGTTAATTGACAAACATGGGATGCTAAAGATTGCCGACTTTGGACTTGCTAATTACTACTCAACTAAGCGTCCCAAGCGACCACTCAC CAGCCGGGTTGTCACACTTTGGTATAGAGCTCCAGAGCTGTTGTTGGGTTCTACAGACTACGGTGTGGGCATTGATTTGTGGAGTGCTGGTTGTTTGATG GCTGAGATGTTTGCAGTCCGCCCAATTATGCCTGGAAGAACTGAGGTTGAGCAACTGCATAGGATCTTTAAGCTTTGCGGAACCCCTTCAGAGGATTACT GGAAAAAACTCAGGCTATCCACAACTTTTCGACCACCACAGGTCTACAAACCCAATCTTATCAAAGCTTTCCGAGATTTCCCTGAATCGTCTTTTGGACT CTTCACTACCCTTCTTGCGTTGGATCCTGATTATCGTGGATCTGCAAATTCAGCTCTCAATAATCAGTTCTTTTACTCCACTCCTTTGGCATGTGACCTA TCTGGTTTACCTGTTATCTGCAACAAAGAAGATGAAGATGCTGATGATCAGAGAAAATCACGCAACTCCAATAGGCAACGATCCCGTAAACAACACGAGA GGAGGAGGAAAGAAGTCGTTTCTGAAACGGATGACAACCTTCACCTAGAACAGGATCCGGAAATGGTAAAGTGGCAGCAGCTGGAGGCAGGGAGGAGTGC CACTAGTAGCAGCAGTTCCTCTGGAATGAAGGAGCAGCAAAGTGGAAAGAGTGAGAGCCCGACTCCTCCACCTCTCCTAAGTAATTCCCCACTTGATTCA TCAAAGCAGAAGCTGCTCTTGTCTCCAGAAGACAGCCCACCTACTCGTAGTAGTGGCCTCAATAAAAGCACCAAGAACCTTCCCCCATTACCAATCTCTA AGACAAGCAGCATGAGCATCAGATACCTTGATGATGATAATAAGAATAATACTAATGATACGTACAGATTTAGAGCAACAGTCCAAAGGTCTGCTTCTTC CAGGGAATACACCAAGTTGCAGCCTAGGAAACATGTGGAACTATACGCAACAGAAGAGTAG
AA sequence Show only first row Show all	>Lus10002469 pacid=23159288 polypeptide=Lus10002469 locus=Lus10002469.g ID=Lus10002469.BGIv1.0 annot-version=v1.0 MGASQGKYPSISPTKGEDNLKLEKEGLRRKINGEHRRSLGPHRHRNSNEARPPLRSYTGGSTEGDDPFKGTSTSDPFGVEETTVDGWPKWLADNVPRQVL AAVVKKSAEDYDKLDKVGSGTYSNVYKARDRESGKIVALKKVRFETSEPESVKFMAREIMILQKLDHPNVVKLEGIATSRLQYSLYLVFDFMQTDLQTVI ESKLTEPQVKSYMQQLLSGLQHCHDRGILHRDIKGANLLIDKHGMLKIADFGLANYYSTKRPKRPLTSRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLM AEMFAVRPIMPGRTEVEQLHRIFKLCGTPSEDYWKKLRLSTTFRPPQVYKPNLIKAFRDFPESSFGLFTTLLALDPDYRGSANSALNNQFFYSTPLACDL SGLPVICNKEDEDADDQRKSRNSNRQRSRKQHERRRKEVVSETDDNLHLEQDPEMVKWQQLEAGRSATSSSSSSGMKEQQSGKSESPTPPPLLSNSPLDS SKQKLLLSPEDSPPTRSSGLNKSTKNLPPLPISKTSSMSIRYLDDDNKNNTNDTYRFRATVQRSASSREYTKLQPRKHVELYATEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71530			Protein kinase superfamily pro...		Lus10002469 [exp]	0	1
AT3G18770			Autophagy-related protein 13 (...		Lus10005812 [exp]	1.4	0.8472
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	2.8	0.8300
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	3.0	0.8547
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	5.2	0.8322
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	5.5	0.8249
AT1G53050			Protein kinase superfamily pro...		Lus10000584 [exp]	6.5	0.7923
AT5G47860			Protein of unknown function (D...		Lus10024193 [exp]	8.1	0.8185
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	10.4	0.8131
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10017418 [exp]	13.0	0.7580
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	13.3	0.7968

Compare expression of checked genes

Lus10002469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.