Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46060 410 / 3e-132 transmembrane protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018827 [exp] 615 / 0 AT2G46060 752 / 0.0 transmembrane protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087300 [exp] 467 / 2e-153 AT2G46060 904 / 0.0 transmembrane protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF12036 [flax] [poplar] DUF3522 Protein of unknown function (DUF3522)
Representative CDS sequence Show only first row Show all	>Lus10002472 pacid=23159289 polypeptide=Lus10002472 locus=Lus10002472.g ID=Lus10002472.BGIv1.0 annot-version=v1.0 ATGTCTGCTGCTCCTGCTACTTTCTTCTACAATAAACAGCTAGCAACTGCCTTTCTCCGATACTTCTACTGTTTCCAGCTTCAGATACCCTCAGACTCTG TTGAATTGCCACCATGGTTCTCTTCTATTTCCATTGCACTGGACTCAGATGTGCAAGCTGGTGCAGGGAGCAAGGCATCTAGTCTGATTATTTGTCTGAG AGACGGCAGTCCCCCTCTCCCTGATGTCTTAAACAGTTCCGTCATACAATCAAGTCCTCTCTCTAATGCAGCATTTGAAAGTATTCAAGGCTCTCAGAAT GTGGACTGCTTCCCAATGCAGAAAAACCTGACTGTGAGGGTGACAAATGAGCAGGTGTCTCCTGGAGTCTGGTATCTAGGCGCATTCAATGGGATTGGGG CAACCAGGGCACAATCCAAAATGATTGTACGCAGACAAAATTACTCCTTTAGTGCCAACATCAGCGTTGATGGGTGCATAACTACGACAATGTGGGGTCA ATACTGTAATCAGACGATCAATCCACTTTCTTGTTCTTTGTCTAACAACTATAGCCTTTTGAATGCGGGCATCAATAAAACTCAAAGTGCAATTTCCTGT GACGACTTTGGGATTTCTTGCCATGGAGTGGGTGAACAAAAAGTGTTTTCATTAGGTGTGATGGATTTAGCCGAAGAATTGTCTATATTGGCTCAAAATA TCAGTGCTAACTCAAATGACGATGCCAGTCATATATCGTTAATGTGTTATGCTCGGAATGGTGCAATGCCTTTGGTGGCGTTGCACGATTATTCCGTTGA CTTGGAAAAAGCTCCTTTAGTAATTAACTCACCAAAGCTTGGGCGGTGGTTTTTCTACATCATACCTACTAATCTTGGAAAAATTCAAGACAATAAGACA CATATATGCTACTCCATTAGAGGGCAAGTGTTTGCATGTCCATCAGGAAAGGCTGGACCCAACTGTACATTTGAGAGACACACCCTTGAGACAGTTCTCA GGAGGGATTCCAATCCCTTCGAATCCTATTATTGGCCAGTCAATGGGGCACTGTCGTCAGAGACTGCAAAATTTCCCCTTGAGCCCTTCTCAAATAAATC TTCCGACAGCAAAGAATCCAATAATCTTTGGACTTATTTTGTCTTGAACTTACCGCGTGAAGGAATTTGGACTTTTGGGTTAAGGCGTTTAACCATCAGT AGCACTTCAAGTGATCAGACCCTCATGTCTGTTTCAGTCGAGAGATGCCCCAGAAAATGCTCTTCCCATGGGGACTGCAAAGTGGCTCTCGATGCCAGTG GCTTGACATCATACAGCTTTTGTGCTTGTGATCGAACACATGGAGGGTTTGACTGTGGCACTGAGATTGTGTCACATCGAGGGCATGTGCGCCAGTTGAT TGCCCTAATAGCATCCAATGCTGCTGCTGTATTTCCTGCGATTTGGGCTCTTCGACAGAAGCACAGATCGGACGTTTTCGTTCCCATTTCCTCCTTGAGA ACAACTATTGCTTGTCCTCCGCAAGCGTTTGCAGAATGGGTGCTGTTCACGTCTAGTGGAATTTCCAGTGGACTATATCATGCATGTGATGTAGGCACCT GGTGCGCACTATCATATAACGTCCTACAGTTCATGTACTTTTGGCTCTCATTCATGGCTGTGGTTAGCACTTTTGTATACTTAGCTACTATTGATGAGGT ATTTAAGAGGACCATTCACACGGTTGTTGCCATCGTCACTGCCCTAATGGCCATAACTAAAGCAACAAGGACATCAAACATTATCCTTGTCATAGCAATT GGATCATTTGGTCTTTTCGTTGGATGGCTAATTGAATTCTCTACCAAGTTCAGGTCTTTCGCCTTTCCCTTGAGTTACTGGTGGAATACTGAGAACAGAT GGCAAACCATGAGGAGATGGATGGACAACTTGATCAAGACAATGTGGAGGCAGTTTCAGTGGGGATTTTTAATTGCAGGGTTTGTTTTCTTGGCCCTTGC AGCGGTAAGCTGGACACTGGAAAGCAGTGAAACCTATTGGATATGGCACAGTCTGTGGCATATTACCATATACACGTCTTCGTTCTTCTTCCTTTGTTCA AAAGCAAACGCTACAAGTAGTAGCCATGATGAAGGTCCTGCAGATGTAATGTATTCGTTGATGCGGCAAGATACGTCTTCAAGAAGGGAAGCGTAG
AA sequence Show only first row Show all	>Lus10002472 pacid=23159289 polypeptide=Lus10002472 locus=Lus10002472.g ID=Lus10002472.BGIv1.0 annot-version=v1.0 MSAAPATFFYNKQLATAFLRYFYCFQLQIPSDSVELPPWFSSISIALDSDVQAGAGSKASSLIICLRDGSPPLPDVLNSSVIQSSPLSNAAFESIQGSQN VDCFPMQKNLTVRVTNEQVSPGVWYLGAFNGIGATRAQSKMIVRRQNYSFSANISVDGCITTTMWGQYCNQTINPLSCSLSNNYSLLNAGINKTQSAISC DDFGISCHGVGEQKVFSLGVMDLAEELSILAQNISANSNDDASHISLMCYARNGAMPLVALHDYSVDLEKAPLVINSPKLGRWFFYIIPTNLGKIQDNKT HICYSIRGQVFACPSGKAGPNCTFERHTLETVLRRDSNPFESYYWPVNGALSSETAKFPLEPFSNKSSDSKESNNLWTYFVLNLPREGIWTFGLRRLTIS STSSDQTLMSVSVERCPRKCSSHGDCKVALDASGLTSYSFCACDRTHGGFDCGTEIVSHRGHVRQLIALIASNAAAVFPAIWALRQKHRSDVFVPISSLR TTIACPPQAFAEWVLFTSSGISSGLYHACDVGTWCALSYNVLQFMYFWLSFMAVVSTFVYLATIDEVFKRTIHTVVAIVTALMAITKATRTSNIILVIAI GSFGLFVGWLIEFSTKFRSFAFPLSYWWNTENRWQTMRRWMDNLIKTMWRQFQWGFLIAGFVFLALAAVSWTLESSETYWIWHSLWHITIYTSSFFFLCS KANATSSSHDEGPADVMYSLMRQDTSSRREA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46060			transmembrane protein-related ...		Lus10002472 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	2.6	0.8979
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	4.5	0.8897
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	6.0	0.8734
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	6.3	0.8527
AT2G39910			ARM repeat superfamily protein...		Lus10028256 [exp]	6.9	0.8503
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	9.5	0.8851
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	10.0	0.8791
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10037485 [exp]	12.0	0.8713
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	12.5	0.8671
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	13.0	0.8624

Compare expression of checked genes

Lus10002472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.