Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00500 302 / 1e-99 ATCG00500.1, ACCD acetyl-CoA carboxylase carboxyl transferase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G162600 [exp] 320 / 2e-106 ATCG00500 592 / 0.0 acetyl-CoA carboxylase carboxyl transferase subunit beta (.1) Potri.005G150200 [exp] 195 / 2e-62 ATCG00500 186 / 9e-58 acetyl-CoA carboxylase carboxyl transferase subunit beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF01039 [flax] [poplar] Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10002473 pacid=23159290 polypeptide=Lus10002473 locus=Lus10002473.g ID=Lus10002473.BGIv1.0 annot-version=v1.0 ATGACTAGTTCAGATAGAATTGAACTTTTGATTGATCCAGACACTTGGGTTCCTATGGACGAAGACATGCAATCCGTAGATCCTATTGAATTTGATTCCG TTGAACCTGACCCTGAACCTATAAATTTTTTGGACTTGGATTGGGATTGGAGTAAAGTTGATTTGAGTGAATATGATTGTAGTGAATTTTATTGGGGTGA ATCTGTAGATCCTAGGGAATTGTATTCGAGTGAATCTGGAGATCCGAGTGAATCTGTTTCGTATGAATTTGATTCAGATGAATTTGAATTTGATTGGGAT GAATTTGAATTTGCTTCGAGTGAATCTGTAGATCTTAGTGAATTGGATTGGAGTGAATCTGATTCGAGTGAATCTGTAGATCCCAGTGAATTGGATTCGG AGGAGGAGAAAACTTATATAGATCGTCTTTATTCTTATCAAGAAGAGACGGGATTAACCGAAGCCGTTCAAACAGGTACAGGTCAACTAAACGGCATTAG CTTAGCAATGGGAGTTATGGATTTTCGGTTTATAGGGGGTAGTATGGGATCGGCCGTAGGCGAGAAAATCACTCGTTTGATCGAGTATGCTGCCAAGAAT TCCTTACCACTTATTCTAGTGTGTGCTTCCGGAGGAGCGCGGATGCAAGAAGGAAGCTTGAGCTTGATGCAAATGGCGAAAATATCATCCGCTTTATATG ATTATCAATTGAATAAAAAGTTATTTTTTGTATCAATCCTTACATCTCCTACGACTGGGGGGGTCACGGCTAGTTTTGGCATGTTGGGGGATATCATTAT TGCGGAACCCAACGCCTATATTGCGTTTGCGGGTAAAAGAGTAATTGAAGAAACATTGAATATCGAAGTCCCTGAAGGTTCACAAGAGGCCGAATTTTTA TTCGATAAGGGCTTATTCGATCTAATCGTACCACGTAATTTTTTAAAGACGGTTCTGAATGAGTTATTTCATCTCCACGCTTTGACTCATTAG
AA sequence Show only first row Show all	>Lus10002473 pacid=23159290 polypeptide=Lus10002473 locus=Lus10002473.g ID=Lus10002473.BGIv1.0 annot-version=v1.0 MTSSDRIELLIDPDTWVPMDEDMQSVDPIEFDSVEPDPEPINFLDLDWDWSKVDLSEYDCSEFYWGESVDPRELYSSESGDPSESVSYEFDSDEFEFDWD EFEFASSESVDLSELDWSESDSSESVDPSELDSEEEKTYIDRLYSYQEETGLTEAVQTGTGQLNGISLAMGVMDFRFIGGSMGSAVGEKITRLIEYAAKN SLPLILVCASGGARMQEGSLSLMQMAKISSALYDYQLNKKLFFVSILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEETLNIEVPEGSQEAEFL FDKGLFDLIVPRNFLKTVLNELFHLHALTH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	0	1
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10002548 [exp]	2.2	0.9488
AT5G36000			unknown protein		Lus10035747 [exp]	2.8	0.9155
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	2.8	0.9449
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	3.5	0.9408
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	3.9	0.9307
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032826 [exp]	4.5	0.9406
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	7.5	0.9167
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	8.5	0.9068
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	8.5	0.9128
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	9.0	0.8766

Compare expression of checked genes

Lus10002473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.