Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47300 231 / 4e-77 SELT SELT-like protein precursor (.1) AT5G58640 223 / 7e-74 Selenoprotein, Rdx type (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001253 [exp] 348 / 3e-123 AT3G47300 269 / 4e-92 SELT-like protein precursor (.1) Lus10040658 [exp] 191 / 2e-61 AT3G47300 245 / 2e-83 SELT-like protein precursor (.1) Lus10018247 [exp] 152 / 2e-46 AT3G47300 205 / 2e-67 SELT-like protein precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117600 [exp] 268 / 1e-91 AT5G58640 224 / 4e-74 Selenoprotein, Rdx type (.1.2) Potri.009G047000 [exp] 228 / 7e-76 AT3G47300 255 / 1e-86 SELT-like protein precursor (.1) Potri.001G253000 [exp] 226 / 6e-75 AT3G47300 253 / 2e-85 SELT-like protein precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF10262 [flax] [poplar] Rdx Rdx family
Representative CDS sequence Show only first row Show all	>Lus10002479 pacid=23170160 polypeptide=Lus10002479 locus=Lus10002479.g ID=Lus10002479.BGIv1.0 annot-version=v1.0 ATGGATCGATCTCAAATTCTGCTGCTGGGATTACCGATCTTCCTGCTCTGCTTCGATATAGCCAACCTCTTCTTAACCTCTCCCCCACCTCCCAAACCAG CTAAGCATGGCGATATTCAAATCAATCCGATTCCACCTATGCAGCAACAGCAGCCGCCTCTCCAGTTCCCCACCCAGGTGCAGAAGTCGGCAGTCATCGG AGGAGCTGGCAGTGTCGGCATTGGCAACACCGTCAACATCAATTTCTGCACTTCTTGTTCTTACAGGAGCAGAGGGTCAGCTGTAAACATGAAAAAAATG TTGGAGACCGAGTTCCCTGGATTGGAAGTGATACTCTCGAACTATCCTCCACCGCTGCCAAAGCGTCTTCTTAGCAAAGTGGTTCCAGTGTTTCAGTTTG GGATGGTCGGCTTGATAATGGGAGGTGAGCAGATCTTCCCCAGGCTGGGATTTGCTGCTCCGCCTGCCTGGTACTATTCCTTGAGAGCCAACAGGTTTGG AAGCATTGCAAGCACCTATCTTTTTGGAAACTTCGTCCAGTCGTTCCTCCAGAGCTCTGGAGCTTTTGAAGTCTACTGCAATGGTCAAATGGTGTTCTCG AAGCTGCGAGAGCACAGGTTCCCTGGTGAGATTGAGCTGAGGGATATAGTCGGGAAGAAGCTTGCTTATTCTGCAACGGTCATTTAA
AA sequence Show only first row Show all	>Lus10002479 pacid=23170160 polypeptide=Lus10002479 locus=Lus10002479.g ID=Lus10002479.BGIv1.0 annot-version=v1.0 MDRSQILLLGLPIFLLCFDIANLFLTSPPPPKPAKHGDIQINPIPPMQQQQPPLQFPTQVQKSAVIGGAGSVGIGNTVNINFCTSCSYRSRGSAVNMKKM LETEFPGLEVILSNYPPPLPKRLLSKVVPVFQFGMVGLIMGGEQIFPRLGFAAPPAWYYSLRANRFGSIASTYLFGNFVQSFLQSSGAFEVYCNGQMVFS KLREHRFPGEIELRDIVGKKLAYSATVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47300		SELT	SELT-like protein precursor (....		Lus10002479 [exp]	0	1
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	3.5	0.8315
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	3.7	0.8486
AT4G03965			RING/U-box superfamily protein...		Lus10029993 [exp]	4.7	0.8409
AT3G18310			unknown protein		Lus10027301 [exp]	8.1	0.7541
AT3G12350			F-box family protein (.1.2)		Lus10018673 [exp]	8.3	0.7514
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	8.7	0.8283
AT1G02700			unknown protein		Lus10036329 [exp]	9.4	0.8097
AT1G47820			unknown protein		Lus10031924 [exp]	11.5	0.8061
AT3G01570			Oleosin family protein (.1)		Lus10014559 [exp]	13.0	0.8133
AT1G05140			Peptidase M50 family protein (...		Lus10035276 [exp]	14.8	0.8142

Compare expression of checked genes

Lus10002479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.