Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01370 69 / 1e-12 ACI1 ALC-interacting protein 1 (.1) AT5G58630 46 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001252 [exp] 514 / 0 AT5G01370 61 / 3e-10 ALC-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117400 [exp] 108 / 4e-26 AT5G01370 85 / 1e-17 ALC-interacting protein 1 (.1) Potri.009G046900 [exp] 68 / 2e-12 AT5G58630 74 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002480 pacid=23170161 polypeptide=Lus10002480 locus=Lus10002480.g ID=Lus10002480.BGIv1.0 annot-version=v1.0 ATGACTAATGAAAGAAGATCGGCCTCCTCCTCCTCCTCCGGCTGTTTCTCCGCCGTTGCACGGTTGCTTCTCTGCAAACGCAACCTCCAGACCCACCCTT CTGATCATACACCTGACCGCTTGACTCAGAGTCAGAACAAAGATCATTACTTTGACGACTGTCAAGAAGTAGCTAATCAGATCACTATTCCGGAGGCTCC TGCGCCAGGGGTGGTGGCTAGGCTGATGGGACTGGAGTCACTCCCGCCGACGCCGGCGAGACGTAGAGCATCCTCGGCGGTCGAGGACTCTGTTACCCGA AGCAGGTCGGTGAACTTCATGGATTACTACTTGCTCCAGCATGATTTTGACTTCTCCTCTACTTCTTCCAACGCTCGTCATCGTCGGGTCAGAACTTCAG TCTCGTTCAGAGAAGTGTCTCCGGCTGCGGCGGCGCCCGATTTCATACTCCTTTACTTGGAAGGTAATAATAATTCCAAGGTGGAGAAACCCAAGAAGAG GACCAGTTCGAAAGTGATCAGGAAAAGGGAGCAGAAGAAGGAAGTGATTGGCAACAAGAATGCCAAATTGAAGGAAACAGAGCAGAAGAAGCAAAGAGCA AGAAAACAGAGTACTCAGCCAGTTGTCAACAACAATGACAGATGTCAGCAAAGGAAGAAAGTTAGCCATAACCGTAGGAGGAAATGTGCAGTAAGACAGA AAGAAGTAGCGGTAGAGTCCAATTTCATGAAGAAGATCAAGAATCGGAAATTTGTCATCGATGGAACTGGGAGTTCATGTCGCTCGGTCCCTCCACCACT GTCAGGTGAGAAAACTTGCGAAAGGAAACTTGAGCGGAAGCAGTCGCCGGCGGCGAAGAACCACGATGAGACGGAGAGATATGTAGCGAAGTTGACGGAG GAAGATGTAAACTTGAGCTTCTGGCTAGCTGCTAAGGGTGGTAATGTAGCTGAATATCGAGGTTTCGAAGAGATGTGTAAGGATTTCGAGCAGGAGTTGC TGGATCTGCTAGTTGATGAACTTGTTTGGGGGTGA
AA sequence Show only first row Show all	>Lus10002480 pacid=23170161 polypeptide=Lus10002480 locus=Lus10002480.g ID=Lus10002480.BGIv1.0 annot-version=v1.0 MTNERRSASSSSSGCFSAVARLLLCKRNLQTHPSDHTPDRLTQSQNKDHYFDDCQEVANQITIPEAPAPGVVARLMGLESLPPTPARRRASSAVEDSVTR SRSVNFMDYYLLQHDFDFSSTSSNARHRRVRTSVSFREVSPAAAAPDFILLYLEGNNNSKVEKPKKRTSSKVIRKREQKKEVIGNKNAKLKETEQKKQRA RKQSTQPVVNNNDRCQQRKKVSHNRRRKCAVRQKEVAVESNFMKKIKNRKFVIDGTGSSCRSVPPPLSGEKTCERKLERKQSPAAKNHDETERYVAKLTE EDVNLSFWLAAKGGNVAEYRGFEEMCKDFEQELLDLLVDELVWG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01370		ACI1	ALC-interacting protein 1 (.1)		Lus10002480 [exp]	0	1
AT5G25280			serine-rich protein-related (....		Lus10008808 [exp]	7.7	0.7106
AT3G23880			F-box and associated interacti...		Lus10023239 [exp]	8.1	0.7626
AT4G28703			RmlC-like cupins superfamily p...		Lus10025947 [exp]	11.3	0.6718
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10040238 [exp]	13.7	0.7795
AT1G20823			RING/U-box superfamily protein...		Lus10013210 [exp]	18.0	0.7249
AT3G17950			unknown protein		Lus10006150 [exp]	23.6	0.7401
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	26.2	0.7040
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	26.5	0.7113
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	26.9	0.6993
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010037 [exp]	27.5	0.7151

Compare expression of checked genes

Lus10002480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.