Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51850 980 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G74740 743 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT5G19450 736 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT5G12480 732 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT1G18890 718 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT3G57530 707 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 688 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT2G31500 624 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 584 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 576 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004807 [exp] 1070 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 1000 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10005038 [exp] 821 / 0 AT3G51850 793 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10009947 [exp] 731 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027361 [exp] 731 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014907 [exp] 723 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 719 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10008631 [exp] 707 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10026742 [exp] 692 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117200 [exp] 993 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G101300 [exp] 986 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.012G071700 [exp] 751 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G054600 [exp] 749 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.015G066200 [exp] 746 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.001G257100 [exp] 736 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.006G052900 [exp] 731 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 729 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.007G127000 [exp] 632 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.010G244800 [exp] 566 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10002482 pacid=23170152 polypeptide=Lus10002482 locus=Lus10002482.g ID=Lus10002482.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCTGCAGATCTCCGGCGGCAGTAGCCAGGGAGGACGTCAAATCAAGCTTCTCCGGCCACGATCACGCCAAGAAGGACGGACCCTCCGGAA AGAACAAGTCGCCCATCACAGTCCTCAATGTTTCCAAGGAGAATATCGAGGAGAGGTACCTCGTCGACAGGGAGCTGGGCCGCGGGGAGTTCGGGGTGAC GTACCTGTGCATCAACAGGGAGACGAGGGAGCTGCTGGCTTGCAAGAGCATATCTAAGAGGAAGCTGAGGACGGCGGTGGACATCGAGGACGTGAGGAGG GAAGTGGCGATTATGAAGCACTTGCCCAGGAATTCCAACATCGTTAGCTTGAAAGAGGCCTGCGAGGACGACAATGCCGTGCATTTGGTTATGGAGCTCT GTGAAGGCGGGGAGCTTTTTGATCGGATTGTGGCTAGGGGACACTATACTGAGCGAGCTGCGGCTGCTGTGACGAGGACGATCGTGGAGGTTGTTCAGCT CTGTCATAAGCATGGTGTGATTCATAGGGATTTGAAGCCGGAGAACTTCTTGTTTGCTAATAAAAAGGAGAATTCGCCTCTCAAAGCCATTGATTTTGGT TTGTCTATTTTCTTCAAGCCAGGGGAGAGGTTTTCTGAAATAGTTGGAAGTCCATATTACATGGCTCCAGAGGTGCTCAAGAGAAATTATGGCCCTGAAA TTGACATATGGAGTGCAGGGGTCATTCTCTACATCTTGTTGTGCGGGGTTCCTCCTTTTTGGGCTGAGTCTGAACAAGGGGTTGCACAAGCAATCCTCCG CGGGATCATAGATTTCAAACGGGATCCATGGCCAAATATTTCAGGCACTGCCAAGAGTTTGGTGAAGGCAATGTTAGAGCCAGACCCGAAACTTCGGTTG ACTGCAAAACAAGTCATTGAGCATCCATGGCTGCAAAATGCTAAAAAGGCTCCAAATGTTCCTCTGGGTGACGTTGTCAAATCAAGGCTTAAACAGTTCT CCATGATGAATAGGTTCAAAAGAAAAGCCTTACGGGTAATTGCGGAGTTCTTATCTGTTGAAGAGGTGGAGGACATCAAAGAAACGTTCAAGAAGATGGA CACTGACAATGATGGTATTATCTCCATTGAAGAACTAAAAGCCGGACTTTGCAGTTTCCAATCCCAACTTGCGGAATCAGAAGTTCAACTGTTGATAGAG GCTGTAGATACAAATGGCAAAGGCACTCTAGACTACGGCGAGTTTCTTGCAGTTTCCCTGCACTTACAAAGAAGTGCCAACGACGAGCATCTCCGGAAAG GCTTCTCGTATTTTGACAAGGATGGGAATGGCTTTATCGAGCCAGAGGAGCTTCAGGATGCATTAATGGAAGACGGAGCAGATGACTGTACAGACGTAGC AAATGACATCTTCCAAGAAGTGGACACAGACAAGGACGGGAAAATCAGCTACGAGGAATTTGCGGCGATGATGAAAACCGGGACGGACTGGAGGAAAGCT TCTCGGCATTATTCCAGAGGGAGATTCAACAGCCTGAGCATCAAGCTGATGAAGGACGGGTCACTGAACTTGGGAAATGAGTGA
AA sequence Show only first row Show all	>Lus10002482 pacid=23170152 polypeptide=Lus10002482 locus=Lus10002482.g ID=Lus10002482.BGIv1.0 annot-version=v1.0 MGNCCRSPAAVAREDVKSSFSGHDHAKKDGPSGKNKSPITVLNVSKENIEERYLVDRELGRGEFGVTYLCINRETRELLACKSISKRKLRTAVDIEDVRR EVAIMKHLPRNSNIVSLKEACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFG LSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGIIDFKRDPWPNISGTAKSLVKAMLEPDPKLRL TAKQVIEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIAEFLSVEEVEDIKETFKKMDTDNDGIISIEELKAGLCSFQSQLAESEVQLLIE AVDTNGKGTLDYGEFLAVSLHLQRSANDEHLRKGFSYFDKDGNGFIEPEELQDALMEDGADDCTDVANDIFQEVDTDKDGKISYEEFAAMMKTGTDWRKA SRHYSRGRFNSLSIKLMKDGSLNLGNE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	0	1
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	1.0	0.8997
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	3.5	0.8575
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	4.2	0.8381
AT3G46450			SEC14 cytosolic factor family ...		Lus10040845 [exp]	4.5	0.8039
AT4G16650			O-fucosyltransferase family pr...		Lus10004729 [exp]	4.9	0.8326
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	6.0	0.8431
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	6.9	0.8620
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	9.5	0.8394
AT2G40070			unknown protein		Lus10030402 [exp]	11.2	0.8354
AT5G59350			unknown protein		Lus10023421 [exp]	11.5	0.8018

Compare expression of checked genes

Lus10002482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.