Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55960 283 / 6e-95 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 92 / 5e-22 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 89 / 2e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 79 / 1e-16 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G46410 68 / 1e-12 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 67 / 3e-12 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT1G55900 64 / 2e-11 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G11860 61 / 3e-10 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004810 [exp] 520 / 0 AT3G55960 295 / 3e-99 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 282 / 2e-94 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 278 / 5e-93 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 260 / 6e-86 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 87 / 3e-19 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 81 / 4e-17 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040202 [exp] 63 / 1e-12 AT3G55960 77 / 3e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032582 [exp] 64 / 2e-11 AT1G55900 378 / 2e-130 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10043165 [exp] 64 / 4e-11 AT1G55900 380 / 2e-131 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100800 [exp] 312 / 3e-106 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 296 / 4e-100 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 283 / 3e-95 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 276 / 4e-92 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 88 / 9e-20 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G062900 [exp] 86 / 3e-19 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G353700 [exp] 67 / 4e-12 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 59 / 9e-10 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G078300 [exp] 59 / 1e-09 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.011G093000 [exp] 57 / 4e-09 AT1G55900 415 / 5e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10002484 pacid=23170154 polypeptide=Lus10002484 locus=Lus10002484.g ID=Lus10002484.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCAGTCGGAGGAGGATCGGCGAGGGAGCAACGACGACAAGTCTGGCGGGTCTCATCGCCGGTATTACTGGATGCTTGGAGATGGCTAATCA GTTGGTTGACTTTTCTCCTCCAGATCGTCAGAGGAACCCCTTCTGCAGCCTTTATGTTACTTTCTTATGTTGGCTTTGGGCAATCCTTAGTGCTCCCTGC ATCTGCTTCTTCTCCTCCTAATCACTCTTTCAAGCGATTGCCCGTCAACGAAGTTTCTTTACAAGGGACGGAAAAGTCGTCGTCCGAAGTTGGCAATCCC CACATAGAGAAGCTCACAGTGGTCCTTGACTTGGATGAAACTCTGGTCTGTGCATACGAAACATCGAGCTTGCCACCAAATGTTCGAACTCGAGCTATAG AAGCTGGACTGAAGTGGTTCGAGATTGAATGCGTCTCCGAAAAGGAAATTGATGGTAGGAAGAAGATAAACCACGTTATAGTATTCGAAAGGCCCGGTTT GCAAGAGTTCTTGACACAGCTTGGTGAATTCGCCCATCTGGTCTTGTTTACTGCTGGACTAGAAGGGTATGCTAGACCGCTGGTTGACAAGATAGATTTG GAGGGTCGATTCTGTATGAGACTCTACAGGCCTTCTACTGTCAGCACGGAGTACAGAGAACACGTGAAGGATCTCTTGTTAGTATCGAAAGCTATGCGAC GAACTGTGATCGTTGATAACAACCCGTACAGTTTCCTACTTCAGCCATTGAATGGTATACCGTGCATGCCATTCTCAGCTAGTCAACCTTATGATCATCA GCTTGTGGATGTGCTGCTTCCGCTCCTGAAGAAACTGTCGTACGAGAAGGATGTTAGGCCTGTGCTCTACGAGAGGTTCCACATGCCGGAATGGTTCCAA ACACATGGGATTCCATCATCTGTAGAGACAAAACTCTAG
AA sequence Show only first row Show all	>Lus10002484 pacid=23170154 polypeptide=Lus10002484 locus=Lus10002484.g ID=Lus10002484.BGIv1.0 annot-version=v1.0 MAESVGGGSAREQRRQVWRVSSPVLLDAWRWLISWLTFLLQIVRGTPSAAFMLLSYVGFGQSLVLPASASSPPNHSFKRLPVNEVSLQGTEKSSSEVGNP HIEKLTVVLDLDETLVCAYETSSLPPNVRTRAIEAGLKWFEIECVSEKEIDGRKKINHVIVFERPGLQEFLTQLGEFAHLVLFTAGLEGYARPLVDKIDL EGRFCMRLYRPSTVSTEYREHVKDLLLVSKAMRRTVIVDNNPYSFLLQPLNGIPCMPFSASQPYDHQLVDVLLPLLKKLSYEKDVRPVLYERFHMPEWFQ THGIPSSVETKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	1.0	0.9786
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	2.2	0.9520
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	2.4	0.9588
AT4G39870			TLD-domain containing nucleola...		Lus10041697 [exp]	2.4	0.9518
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002302 [exp]	3.5	0.9495
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	4.0	0.9445
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	4.0	0.9615
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10010695 [exp]	4.0	0.9524
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	4.6	0.9517
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	4.7	0.9499

Compare expression of checked genes

Lus10002484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.