Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G24750 117 / 1e-31 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G42220 105 / 5e-28 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G27700 61 / 3e-11 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G21045 56 / 7e-10 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G17850 42 / 6e-05 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66170 40 / 0.0004 STR18 sulfurtransferase 18 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004811 [exp] 451 / 7e-164 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10019454 [exp] 105 / 5e-27 AT4G24750 390 / 2e-137 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10043306 [exp] 103 / 1e-26 AT4G24750 389 / 3e-137 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10021032 [exp] 94 / 4e-23 AT2G42220 304 / 2e-105 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10023820 [exp] 92 / 2e-22 AT2G42220 302 / 1e-104 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10023243 [exp] 54 / 2e-08 AT4G27700 305 / 7e-106 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10012566 [exp] 52 / 2e-08 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10008866 [exp] 46 / 7e-06 AT4G27700 249 / 4e-84 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10005635 [exp] 44 / 2e-05 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100600 [exp] 295 / 4e-102 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G086100 [exp] 113 / 2e-30 AT4G24750 416 / 1e-147 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G059200 [exp] 100 / 5e-26 AT2G42220 318 / 4e-111 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.012G020700 [exp] 54 / 1e-08 AT4G27700 262 / 4e-89 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G131300 [exp] 50 / 8e-08 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G008000 [exp] 51 / 1e-07 AT4G27700 268 / 2e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G111200 [exp] 49 / 2e-07 AT2G17850 162 / 5e-52 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G106400 [exp] 43 / 8e-05 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.002G014900 [exp] 40 / 0.0004 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10002485 pacid=23170167 polypeptide=Lus10002485 locus=Lus10002485.g ID=Lus10002485.BGIv1.0 annot-version=v1.0 ATGGCGATTCAATTGAACCGCACACTCACACCGAACTACTACTCCCACCACTACCCTTCCACCAAACAATCCAATCCTCACAAACGACAATCCCACATCG CAGCAGCCTCGGCCGTCACCAATGGCCGGCAACTCATTCAGTCCGGCGTCGTCAAGCCCATTCTCCCCAAGGATGCAGCGAATGCTACTTCGTCGGAAGG TTTCACTCTCTTGGATATAAGGCCGGAATGGGAGAGAAGCAAGGCTCGAGTTATAGAGTCCCTCCATGTCCCGCTCTTCGTCAACGATCCGGACACTGGC CCTGTAACTCTTCTCAAGAAGTGGGTTCACTTCGGGTACATCGGGCTGTGGACTGGCCAGAACTTCACGACTATGAACCCAGATTTTTTAAAGCAAGTTG AAGCTTCAGTTCCTGATAAGAACTCTAAGCTGCTTGTAGCTTGCGGCGAAGGCCTAAGGTCGATGATGGCAGCATCGAAGCTTCACCAAGGTGGGTACAA GAATTTGGGATGGTTAGCCGGAGGATTCAACCGTGCTGACGACGGTGACTTCCAGGGCGTCGAAGGGTCTGAGAAGTTACAGTATGCTACAATTGGGGGT GTTTCTTATTACTTTCTTCAACTGCTTATACTCTTGCAGGCTGTAGGCAAGAACAATTGA
AA sequence Show only first row Show all	>Lus10002485 pacid=23170167 polypeptide=Lus10002485 locus=Lus10002485.g ID=Lus10002485.BGIv1.0 annot-version=v1.0 MAIQLNRTLTPNYYSHHYPSTKQSNPHKRQSHIAAASAVTNGRQLIQSGVVKPILPKDAANATSSEGFTLLDIRPEWERSKARVIESLHVPLFVNDPDTG PVTLLKKWVHFGYIGLWTGQNFTTMNPDFLKQVEASVPDKNSKLLVACGEGLRSMMAASKLHQGGYKNLGWLAGGFNRADDGDFQGVEGSEKLQYATIGG VSYYFLQLLILLQAVGKNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08920			Rhodanese/Cell cycle control p...		Lus10002485 [exp]	0	1
AT3G08920			Rhodanese/Cell cycle control p...		Lus10004811 [exp]	1.7	0.9728
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	2.6	0.9750
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	3.7	0.9746
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	4.5	0.9713
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	6.0	0.9692
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	7.2	0.9718
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	7.9	0.9685
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	8.9	0.9682
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	9.5	0.9679
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	9.8	0.9651

Compare expression of checked genes

Lus10002485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.